Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-94 349.7 188 100.0
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 6.6e-41 171.4 231 48.5
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 7.3e-32 141.4 291 37.1
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.9e-28 129.4 242 40.1
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 2.9e-28 129.4 242 40.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 4.9e-28 128.6 321 34.0
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.1e-27 127.5 242 41.3
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 7.1e-27 124.8 242 38.8
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 2.7e-26 122.9 242 40.9
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 2.7e-26 122.9 242 40.9
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 3.5e-26 122.5 259 37.1
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 3.9e-25 119.0 260 33.8
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.6e-23 113.6 270 34.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 4.0e-22 109.0 79 75.9
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.2e-21 107.5 50 94.0
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.9e-19 100.1 281 32.7
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 9.3e-19 97.8 74 74.3
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.1e-15 86.7 49 77.6
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 8.1e-15 84.7 50 68.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.8e-14 83.6 66 63.6
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.8e-14 83.6 50 68.0
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.8e-14 83.6 50 70.0
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 5.3e-14 82.0 50 66.0
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.2e-13 80.9 50 68.0
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 1.5e-13 80.5 50 70.0
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.5e-13 80.5 50 70.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 2.6e-13 79.7 50 68.0
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 3.4e-13 79.3 50 66.0
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 3.4e-13 79.3 64 73.4
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.5e-13 79.0 50 66.0
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.5e-13 79.0 49 65.3
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 4.5e-13 79.0 50 68.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 5.8e-13 78.6 50 68.0
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 5.8e-13 78.6 50 64.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 7.6e-13 78.2 50 68.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 9.9e-13 77.8 50 66.0
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 9.9e-13 77.8 50 66.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 9.9e-13 77.8 47 68.1
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.3e-12 77.4 49 67.3
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.3e-12 77.4 50 68.0
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.7e-12 77.0 50 66.0
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.7e-12 77.0 66 59.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.7e-12 77.0 66 59.1
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.7e-12 77.0 50 66.0
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 64.0
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 66.0
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 68.0
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 64.0
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 66.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.2e-12 76.6 50 66.0
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.9e-12 76.3 50 64.0
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.9e-12 76.3 49 63.3
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.9e-12 76.3 50 66.0
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.9e-12 76.3 50 64.0
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.9e-12 76.3 50 68.0
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 4.9e-12 75.5 50 64.0
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 6.4e-12 75.1 50 60.0
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 6.4e-12 75.1 50 60.0
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.4e-12 74.7 50 64.0
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 8.4e-12 74.7 50 64.0
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 8.4e-12 74.7 50 64.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 62.0
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 62.0
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 62.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 64.0
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 64.0
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 64.0
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-11 74.3 50 64.0
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.1e-11 74.3 65 55.4
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.1e-11 74.3 66 56.1
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.4e-11 73.9 50 64.0
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 1.9e-11 73.6 104 43.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.9e-11 73.6 50 64.0
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 2.4e-11 73.2 50 64.0
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 2.4e-11 73.2 50 64.0
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.4e-11 73.2 50 64.0
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 3.2e-11 72.8 50 60.0
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 3.2e-11 72.8 50 62.0
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.2e-11 72.8 45 68.9
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 4.2e-11 72.4 50 64.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 5.4e-11 72.0 50 64.0
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 5.4e-11 72.0 50 62.0
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 5.4e-11 72.0 50 62.0
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.4e-11 72.0 50 64.0
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 7.1e-11 71.6 50 64.0
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 7.1e-11 71.6 50 62.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 9.3e-11 71.2 50 58.0
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 9.3e-11 71.2 50 62.0
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.2e-10 70.9 50 62.0
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.6e-10 70.5 50 62.0
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.6e-10 70.5 50 62.0
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.6e-10 70.5 50 62.0
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.7e-10 69.7 50 64.0
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 2.7e-10 69.7 67 52.2
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 3.5e-10 69.3 50 58.0
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 4.6e-10 68.9 50 60.0
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.8e-09 67.0 51 62.7
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.3e-09 66.6 51 62.7
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-09 66.6 51 60.8
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.7e-09 65.1 50 60.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 8.7e-09 64.7 51 60.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.1e-08 64.3 50 62.0
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.5e-08 63.9 77 45.5
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 7.4e-08 61.6 45 60.0
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 7.4e-08 61.6 50 54.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.6e-07 60.5 50 58.0
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 2.1e-07 60.1 50 54.0
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.7e-07 59.3 50 52.0
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.7e-07 59.3 50 52.0
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 3.7e-07 59.3 50 52.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 8.1e-07 58.2 51 51.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.1e-07 58.2 50 60.0
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.4e-06 57.4 74 47.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 4.0e-06 55.8 51 47.1
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 4.0e-06 55.8 61 52.5
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 5.3e-06 55.5 51 49.0


User provided reference genes

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