Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p33060 Brassica napus HOM05D010352 ORTHO05D012062 4.2e-131 471.5 258 100.0
C02p50830 Brassica napus HOM05D010352 ORTHO05D012062 2.8e-82 309.3 239 78.7
BraA02t08327Z Brassica rapa HOM05D010352 ORTHO05D012062 3.9e-60 235.7 129 97.7
BcaC07g42627 Brassica carinata HOM05D010352 ORTHO05D012062 1.5e-48 197.2 127 73.2
BolC2t11165H Brassica oleracea HOM05D010352 ORTHO05D012062 1.0e-47 194.5 102 91.2
BcaC03g17159 Brassica carinata HOM05D010352 ORTHO05D012062 1.1e-46 191.0 239 48.5
BolC2t11166H Brassica oleracea HOM05D010352 ORTHO05D012062 1.3e-44 184.1 242 47.9
A09p54100 Brassica napus HOM05D010352 ORTHO05D012062 3.3e-43 179.5 129 64.3
BraA09t40823Z Brassica rapa HOM05D010352 ORTHO05D012062 8.2e-42 174.9 125 64.0
A09p54110 Brassica napus HOM05D010352 ORTHO05D012062 2.9e-39 166.4 233 42.9
C08p36990 Brassica napus HOM05D010352 ORTHO05D012062 6.5e-39 165.2 233 42.5
BraA09t40825Z Brassica rapa HOM05D010352 ORTHO05D012062 3.6e-37 159.5 240 41.7
BcaC07g42628 Brassica carinata HOM05D010352 ORTHO05D012062 4.3e-35 152.5 130 66.2
BcaC03g17158 Brassica carinata HOM05D010352 ORTHO05D031768 5.9e-32 142.1 71 90.1
BolC4t24609H Brassica oleracea HOM05D001456 ORTHO05D012062 2.9e-31 139.8 129 51.2
BraA02t08328Z Brassica rapa HOM05D010352 ORTHO05D012062 3.8e-31 139.4 124 65.3
BcaC02g10275 Brassica carinata HOM05D001456 ORTHO05D012062 6.5e-31 138.7 129 51.2
C04p30870 Brassica napus HOM05D001456 ORTHO05D012062 6.5e-31 138.7 129 51.2
Carub.0005s2878 Capsella rubella HOM05D001456 ORTHO05D012062 9.4e-30 134.8 129 51.2
AT3G62050 Arabidopsis thaliana HOM05D001456 ORTHO05D012062 2.7e-29 133.3 126 49.2
BcaNung02251 Brassica carinata HOM05D001456 ORTHO05D012062 8.2e-26 121.7 129 48.1
AL5G44650 Arabidopsis lyrata HOM05D001456 ORTHO05D012062 5.3e-25 119.0 129 43.4
CARHR150720 Cardamine hirsuta HOM05D001456 ORTHO05D012062 6.3e-18 95.5 129 38.0
BcaC03g17162 Brassica carinata HOM05D010352 ORTHO05D031768 1.6e-16 90.9 57 70.2
BolC2t11170H Brassica oleracea HOM05D010352 ORTHO05D031768 1.6e-16 90.9 57 70.2
BcaC02g08726 Brassica carinata HOM05D001456 ORTHO05D031976 8.5e-15 85.1 125 36.0
C04p51270 Brassica napus HOM05D001456 ORTHO05D031976 8.5e-15 85.1 125 36.0
BolC4t26717H Brassica oleracea HOM05D001456 ORTHO05D031976 8.5e-15 85.1 125 36.0
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 2.1e-13 80.5 106 36.8
Potri.013G003301 Populus trichocarpa HOM05D001456 ORTHO05D002799 4.0e-12 76.3 103 35.9
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.2e-11 74.7 107 35.5
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 1.5e-11 74.3 107 36.4
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 1.5e-11 74.3 107 35.5
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 1.5e-11 74.3 107 36.4
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.5e-11 74.3 103 36.9
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 2.0e-11 73.9 118 33.9
CAN.G497.101 Capsicum annuum HOM05D001456 ORTHO05D002799 2.0e-11 73.9 107 35.5
Sabra13G0002600 Salix brachista HOM05D001456 ORTHO05D002799 2.0e-11 73.9 103 35.0
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.0e-11 73.9 103 35.9
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.6e-11 73.6 103 36.9
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.4e-11 73.2 103 36.9
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 3.4e-11 73.2 107 34.6
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 3.4e-11 73.2 107 34.6
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 4.4e-11 72.8 103 36.9
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 4.4e-11 72.8 103 36.9
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 4.4e-11 72.8 118 33.9
A02p41490 Brassica napus HOM05D001456 ORTHO05D014991 5.7e-11 72.4 104 35.6
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 5.7e-11 72.4 103 37.9
Potri.013G003100 Populus trichocarpa HOM05D001456 ORTHO05D002799 5.7e-11 72.4 104 37.5
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.7e-11 72.4 103 36.9
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 7.5e-11 72.0 107 34.6
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 7.5e-11 72.0 107 34.6
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 7.5e-11 72.0 107 34.6
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 7.5e-11 72.0 103 36.9
CiPaw.08G083800 Carya illinoinensis HOM05D001456 ORTHO05D002799 7.5e-11 72.0 103 35.9
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 7.5e-11 72.0 107 36.4
PGSC0003DMG400001458 Solanum tuberosum HOM05D001456 ORTHO05D002799 7.5e-11 72.0 107 33.6
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 9.8e-11 71.6 107 34.6
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 9.8e-11 71.6 104 35.6
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 9.8e-11 71.6 107 34.6
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 9.8e-11 71.6 104 35.6
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 9.8e-11 71.6 107 34.6
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 9.8e-11 71.6 107 35.5
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 9.8e-11 71.6 103 35.9
TAR636G1258 Trochodendron aralioides HOM05D001456 ORTHO05D002799 9.8e-11 71.6 118 33.9
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 9.8e-11 71.6 107 35.5
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 1.3e-10 71.2 107 34.6
Sopen02g033580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-10 71.2 106 34.0
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.7e-10 70.9 107 34.6
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 1.7e-10 70.9 107 34.6
A07p06650 Brassica napus HOM05D010352 ORTHO05D039704 1.7e-10 70.9 95 37.9
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 1.7e-10 70.9 107 34.6
Ca_09240_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 1.7e-10 70.9 101 36.6
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 1.7e-10 70.9 107 31.8
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 2.2e-10 70.5 102 35.3
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 2.2e-10 70.5 107 33.6
C06p42210 Brassica napus HOM05D001456 ORTHO05D002799 2.2e-10 70.5 102 35.3
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 2.2e-10 70.5 107 33.6
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 2.2e-10 70.5 107 33.6
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.2e-10 70.5 107 35.5
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.2e-10 70.5 107 31.8
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 2.2e-10 70.5 118 33.1
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 2.8e-10 70.1 107 33.6
BcaC07g42629 Brassica carinata HOM05D010352 ORTHO05D012062 2.8e-10 70.1 117 37.6
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.8e-10 70.1 103 35.9
Glyma.03G223251 Glycine max HOM05D001456 ORTHO05D002799 2.8e-10 70.1 107 33.6
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 2.8e-10 70.1 107 32.7
A09p07250 Brassica napus HOM05D001456 ORTHO05D002799 3.7e-10 69.7 107 35.5
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 4.8e-10 69.3 103 35.0
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 4.8e-10 69.3 103 38.8
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 4.8e-10 69.3 103 35.0
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 4.8e-10 69.3 103 34.0
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 4.8e-10 69.3 103 35.0
BcaC04g23460 Brassica carinata HOM05D001456 ORTHO05D002799 6.3e-10 68.9 107 34.6
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 6.3e-10 68.9 107 33.6
C09p08100 Brassica napus HOM05D001456 ORTHO05D002799 6.3e-10 68.9 107 34.6
BolC9t53724H Brassica oleracea HOM05D001456 ORTHO05D002799 6.3e-10 68.9 107 34.6
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 8.3e-10 68.6 103 34.0
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 8.3e-10 68.6 110 33.6
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 8.3e-10 68.6 110 33.6
BcaB01g00644 Brassica carinata HOM05D010352 ORTHO05D039704 1.1e-09 68.2 130 32.3
Ah.14g086290 Amaranthus hybridus HOM05D001456 ORTHO05D002799 1.8e-09 67.4 103 35.0
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.8e-09 67.4 103 38.8
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 1.8e-09 67.4 108 37.0
Carub.0005s1571 Capsella rubella HOM05D010352 ORTHO05D012062 1.8e-09 67.4 127 33.1
AL5G20610 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 2.4e-09 67.0 97 37.1
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 3.1e-09 66.6 103 33.0
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 5.4e-09 65.9 103 33.0
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 9.1e-09 65.1 103 33.0
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 9.1e-09 65.1 117 31.6
Aa31LG11G2170 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.2e-08 64.7 103 34.0
Nn5g28756 Nelumbo nucifera HOM05D004262 ORTHO05D004886 1.2e-08 64.7 92 33.7
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.2e-08 64.7 107 31.8
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 1.2e-08 64.7 107 31.8
Aqoxy5G02078 Aquilegia oxysepala HOM05D004262 ORTHO05D004886 1.6e-08 64.3 100 34.0
AL8G37840 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.6e-08 64.3 103 32.0
C02p25960 Brassica napus HOM05D001636 ORTHO05D009134 1.6e-08 64.3 236 25.8
SMO143G0012 Selaginella moellendorffii HOM05D001456 ORTHO05D004886 1.6e-08 64.3 103 35.0
Solyc02g088880.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.6e-08 64.3 107 31.8
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.0e-08 63.9 103 33.0
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 2.0e-08 63.9 84 40.5
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 2.0e-08 63.9 97 30.9
Lj1g0013696 Lotus japonicus HOM05D001456 ORTHO05D002799 2.0e-08 63.9 108 32.4
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 2.7e-08 63.5 85 34.1
CARHR150710 Cardamine hirsuta HOM05D010352 ORTHO05D012062 2.7e-08 63.5 131 34.4
Os12g0162900 Oryza sativa ssp. japonica HOM05D004262 ORTHO05D004886 2.7e-08 63.5 105 29.5
PSO675G0841 Papaver somniferum HOM05D004262 ORTHO05D004886 2.7e-08 63.5 100 36.0
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 3.5e-08 63.2 97 30.9
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 5.9e-08 62.4 85 32.9
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 5.9e-08 62.4 85 32.9
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 5.9e-08 62.4 85 32.9
SalBow8G4827 Salvia bowleyana HOM05D004262 ORTHO05D004886 7.7e-08 62.0 105 30.5
Mapoly0025s0013 Marchantia polymorpha HOM05D001456 ORTHO05D004886 1.0e-07 61.6 100 33.0
A02p41480 Brassica napus HOM05D001456 ORTHO05D002799 1.3e-07 61.2 103 31.1
BraA02t09089Z Brassica rapa HOM05D001456 ORTHO05D002799 1.3e-07 61.2 103 31.1
Migut.H02473 Erythranthe guttata HOM05D004262 ORTHO05D004886 1.3e-07 61.2 105 30.5
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 1.3e-07 61.2 93 34.4
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.7e-07 60.8 103 32.0
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 1.7e-07 60.8 100 31.0
Zm00001eb139430 Zea mays HOM05D004262 ORTHO05D004886 1.7e-07 60.8 105 31.4
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.2e-07 60.5 97 33.0
Sabra19G0004000 Salix brachista HOM05D004262 ORTHO05D004886 2.2e-07 60.5 100 29.0
Sabra19G0021500 Salix brachista HOM05D004262 ORTHO05D004886 2.2e-07 60.5 100 29.0
Sp2g24430 Schrenkiella parvula HOM05D001456 ORTHO05D002799 2.2e-07 60.5 92 33.7
BcaB03g15112 Brassica carinata HOM05D001636 ORTHO05D009134 2.9e-07 60.1 190 26.3
PSO675G3917 Papaver somniferum HOM05D004262 ORTHO05D004886 2.9e-07 60.1 103 33.0
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 6.5e-07 58.9 96 34.4
Lsat_1_v5_gn_5_101740 Lactuca sativa HOM05D004262 ORTHO05D004886 6.5e-07 58.9 100 30.0
Peaxi162Scf00166g00428 Petunia axillaris HOM05D001456 ORTHO05D002799 6.5e-07 58.9 101 30.7
SMO200G0216 Selaginella moellendorffii HOM05D001456 ORTHO05D004886 6.5e-07 58.9 98 32.7
AT5G09840 Arabidopsis thaliana HOM05D004262 ORTHO05D004886 8.5e-07 58.5 100 29.0
A03p55270 Brassica napus HOM05D001636 ORTHO05D009134 8.5e-07 58.5 92 34.8
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 8.5e-07 58.5 92 34.8
Carub.0005s1718 Capsella rubella HOM05D001456 ORTHO05D011781 8.5e-07 58.5 86 32.6
Glyma.04G216400 Glycine max HOM05D004262 ORTHO05D004886 1.1e-06 58.2 92 30.4
AL6G20250 Arabidopsis lyrata HOM05D004262 ORTHO05D004886 1.9e-06 57.4 100 29.0
Thhalv10005625m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 2.5e-06 57.0 92 29.3
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 3.2e-06 56.6 141 27.7
C07p49300 Brassica napus HOM05D001636 ORTHO05D009134 3.2e-06 56.6 96 33.3
BolC1t04225H Brassica oleracea HOM05D001456 ORTHO05D015898 3.2e-06 56.6 141 27.7
Carub.0006s0826 Capsella rubella HOM05D004262 ORTHO05D004886 3.2e-06 56.6 100 29.0
Thhalv10012635m.g Eutrema salsugineum HOM05D004262 ORTHO05D004886 3.2e-06 56.6 92 28.3
TPR.G12210 Trifolium pratense HOM05D004262 ORTHO05D004886 3.2e-06 56.6 101 30.7
DCAR_014352 Daucus carota HOM05D004262 ORTHO05D004886 4.2e-06 56.2 100 29.0
LjContig00049g0001734 Lotus japonicus HOM05D001456 ORTHO05D002799 4.2e-06 56.2 110 29.1
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 5.5e-06 55.8 98 31.6
Thhalv10019634m.g Eutrema salsugineum HOM05D001456 ORTHO05D019698 5.5e-06 55.8 102 29.4
AL5G30040 Arabidopsis lyrata HOM05D001456 ORTHO05D018423 7.2e-06 55.5 126 27.8
AT3G61028 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 7.2e-06 55.5 102 26.5
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 7.2e-06 55.5 91 34.1
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 7.2e-06 55.5 91 34.1
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 7.2e-06 55.5 108 33.3


User provided reference genes

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