Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.2e-183 646.4 328 100.0
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 7.0e-147 524.2 328 86.0
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 7.5e-141 504.2 328 83.8
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 4.1e-139 498.4 325 80.3
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 5.9e-138 494.6 325 79.7
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 7.3e-136 487.6 325 79.1
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.5e-136 487.3 325 78.8
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.8e-135 485.7 325 78.8
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 4.7e-135 485.0 325 78.2
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 2.6e-133 479.2 329 81.5
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 2.6e-133 479.2 329 81.5
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 3.7e-132 475.3 325 76.3
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.3e-129 466.1 314 79.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 4.3e-128 461.8 325 74.2
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.4e-126 456.8 328 74.4
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 3.1e-126 455.7 328 74.1
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 6.8e-126 454.5 328 73.5
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.2e-125 453.8 328 73.8
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.2e-124 449.5 328 74.1
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.9e-124 449.1 328 72.9
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 4.9e-124 448.4 328 73.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.4e-124 448.0 328 72.6
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 6.4e-124 448.0 328 73.5
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 8.3e-124 447.6 328 73.8
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.1e-123 447.2 314 77.7
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 9.2e-123 444.1 328 73.2
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 7.8e-122 441.0 328 72.9
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 3.9e-121 438.7 294 79.6
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.6e-121 437.6 325 68.9
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 8.6e-121 437.6 325 68.9
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-120 437.2 325 68.9
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 7.3e-120 434.5 325 68.9
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.2e-119 433.7 318 75.2
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.6e-119 433.3 325 68.9
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 4.7e-119 431.8 325 68.6
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 4.7e-119 431.8 325 68.9
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 6.2e-119 431.4 320 72.5
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 8.1e-119 431.0 325 68.0
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.1e-118 430.6 325 69.2
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 2.3e-118 429.5 325 67.7
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 4.0e-118 428.7 325 68.3
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 5.2e-118 428.3 325 67.4
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 8.9e-118 427.6 325 67.7
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 2.0e-117 426.4 325 68.0
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.0e-117 426.4 325 67.1
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.6e-117 426.0 325 67.7
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.4e-117 425.6 325 67.1
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.4e-117 425.2 325 68.3
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 4.4e-117 425.2 325 67.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 7.5e-117 424.5 325 67.7
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 7.5e-117 424.5 325 67.7
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 9.8e-117 424.1 325 66.5
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 9.8e-117 424.1 325 67.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 9.8e-117 424.1 325 67.4
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-116 423.7 325 67.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.2e-116 422.9 325 68.0
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 2.2e-116 422.9 325 66.8
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 8.3e-116 421.0 325 66.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.9e-115 419.9 325 67.4
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 3.2e-115 419.1 325 66.5
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 5.4e-115 418.3 325 66.2
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 7.1e-115 417.9 325 66.2
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.2e-114 417.2 325 65.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 7.8e-114 414.5 325 65.2
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 7.8e-114 414.5 325 66.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.0e-113 414.1 325 66.5
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.3e-113 413.7 325 64.9
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.3e-113 413.7 325 66.2
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.7e-113 413.3 325 64.9
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.3e-113 412.9 325 67.1
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.9e-113 412.1 325 65.2
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 3.9e-113 412.1 325 64.9
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 3.9e-113 412.1 325 64.6
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 8.6e-113 411.0 325 64.6
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.9e-112 409.8 325 64.3
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.5e-112 409.5 325 64.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.2e-111 407.1 336 63.4
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.1e-111 406.4 325 64.9
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 4.7e-111 405.2 325 64.0
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.2e-111 404.8 325 64.3
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 8.1e-111 404.4 383 57.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-110 404.1 325 64.6
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.4e-110 403.7 314 65.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.4e-110 403.7 325 63.4
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.8e-110 403.3 325 62.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.1e-110 402.5 327 63.3
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 5.2e-110 401.7 325 64.3
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 6.8e-110 401.4 325 63.4
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 6.8e-110 401.4 325 64.0
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.5e-109 400.2 325 64.6
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 7.6e-109 397.9 325 63.4
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.7e-108 395.6 320 65.0
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 4.9e-108 395.2 328 62.5
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 6.4e-108 394.8 325 62.8
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.1e-107 394.0 325 63.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.9e-107 393.3 325 62.2
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.1e-107 391.3 331 61.9
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.2e-106 390.6 325 61.8
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 1.0e-105 387.5 323 62.8
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 1.7e-105 386.7 325 61.2
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 3.9e-105 385.6 325 60.9
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 6.6e-105 384.8 326 62.9
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 6.6e-105 384.8 328 62.8
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 6.6e-105 384.8 362 56.9
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.1e-104 384.0 325 60.0
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.1e-104 384.0 309 65.0
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.5e-104 382.9 325 62.5
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 2.5e-104 382.9 338 60.1
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 7.3e-104 381.3 325 62.8
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.6e-103 380.2 325 60.9
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 6.2e-103 378.3 309 62.8
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 6.2e-103 378.3 309 64.7
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.1e-102 377.5 315 61.6
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.4e-102 377.1 325 60.0
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.5e-101 373.6 325 59.4
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.4e-101 372.5 325 57.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.4e-101 372.5 325 57.5
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 8.4e-100 367.9 285 67.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 2.4e-99 366.3 338 59.2
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 3.2e-99 365.9 293 70.6
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.2e-98 364.0 325 57.5
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 2.1e-98 363.2 309 61.8
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 2.1e-98 363.2 356 55.6
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.3e-97 360.5 309 60.5
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.7e-97 360.1 292 63.0
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.5e-96 356.3 315 59.4
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 5.6e-96 355.1 325 60.3
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.3e-95 354.0 325 58.8
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 8.1e-95 351.3 326 58.3
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 4.0e-94 349.0 330 56.7
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.9e-94 348.2 327 56.9
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.8e-92 342.4 215 78.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.2e-90 337.4 325 57.5
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 6.0e-90 335.1 326 56.7
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 7.9e-90 334.7 322 61.5
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.3e-89 334.0 218 74.8
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 6.6e-89 331.6 277 62.1
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.7e-89 331.3 349 51.9
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.1e-88 330.9 326 52.5
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 7.4e-88 328.2 224 72.3
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.4e-86 323.2 346 50.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.2e-85 320.9 274 60.2
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.5e-85 318.9 383 50.1
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.9e-84 316.2 301 58.8
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.1e-83 311.6 324 52.8
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 8.2e-71 271.6 215 60.5
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.1e-70 271.2 328 47.3
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 9.3e-67 258.1 281 53.0
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 5.0e-60 235.7 299 51.2
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-51 207.6 301 45.8
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-51 207.6 328 43.6
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 7.9e-50 201.8 173 63.0
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.5e-48 197.6 174 56.3
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 6.3e-47 192.2 174 58.0
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.2e-45 188.0 121 71.9
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.0e-41 172.9 252 45.2
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.3e-39 167.9 123 69.1
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.7e-37 158.7 181 49.2
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-25 120.9 317 34.1
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.5e-24 117.9 85 63.5
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 6.3e-23 112.5 309 34.0
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-19 101.3 121 44.6
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 9.5e-19 98.6 264 26.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-17 95.1 65 69.2
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.0e-17 95.1 63 73.0
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.0e-17 93.2 95 51.6
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.8e-14 84.3 52 82.7
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.8e-14 84.3 175 34.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.0e-10 68.9 47 70.2


User provided reference genes

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