Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 6.6e-61 237.3 126 100.0
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.5e-12 76.6 74 56.8
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 3.3e-12 75.5 74 54.1
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 1.6e-11 73.2 66 62.1
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.6e-11 73.2 66 62.1
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 3.6e-11 72.0 65 61.5
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 4.8e-11 71.6 66 60.6
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 4.8e-11 71.6 66 60.6
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 4.8e-11 71.6 66 60.6
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.8e-11 71.6 66 59.1
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.8e-11 71.6 66 59.1
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 6.2e-11 71.2 66 59.1
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 6.2e-11 71.2 65 61.5
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 8.1e-11 70.9 66 56.1
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 8.1e-11 70.9 74 55.4
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 1.1e-10 70.5 66 56.1
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.1e-10 70.5 66 56.1
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.1e-10 70.5 66 56.1
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.1e-10 70.5 66 57.6
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.4e-10 70.1 66 57.6
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 1.4e-10 70.1 66 57.6
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.4e-10 70.1 65 60.0
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.4e-10 70.1 65 60.0
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.8e-10 69.7 50 68.0
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.8e-10 69.7 66 54.5
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 1.8e-10 69.7 66 57.6
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 3.1e-10 68.9 66 57.6
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 3.1e-10 68.9 66 57.6
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 3.1e-10 68.9 66 57.6
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 3.1e-10 68.9 66 57.6
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 3.1e-10 68.9 65 60.0
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.1e-10 68.9 65 60.0
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 4.0e-10 68.6 66 59.1
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 4.0e-10 68.6 64 56.2
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 4.0e-10 68.6 80 50.0
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 5.3e-10 68.2 66 53.0
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 6.9e-10 67.8 66 51.5
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 6.9e-10 67.8 66 57.6
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 6.9e-10 67.8 66 57.6
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 6.9e-10 67.8 95 51.6
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 6.9e-10 67.8 70 50.0
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 6.9e-10 67.8 66 57.6
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 9.0e-10 67.4 64 56.2
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 9.0e-10 67.4 66 56.1
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 9.0e-10 67.4 66 56.1
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.2e-09 67.0 66 56.1
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 1.2e-09 67.0 66 56.1
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.2e-09 67.0 104 40.4
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.2e-09 67.0 65 56.9
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.5e-09 66.6 66 54.5
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.5e-09 66.6 66 54.5
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 1.5e-09 66.6 64 54.7
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.5e-09 66.6 66 53.0
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 2.0e-09 66.2 66 51.5
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 2.0e-09 66.2 51 66.7
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 53.0
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 54.5
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 54.5
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 54.5
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 56.1
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 3.4e-09 65.5 66 54.5
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 3.4e-09 65.5 106 39.6
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 5.8e-09 64.7 52 61.5
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 5.8e-09 64.7 66 54.5
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 5.8e-09 64.7 66 50.0
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 7.6e-09 64.3 66 56.1
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 7.6e-09 64.3 66 53.0
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 7.6e-09 64.3 66 50.0
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 9.9e-09 63.9 63 54.0
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 9.9e-09 63.9 66 56.1
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 9.9e-09 63.9 64 54.7
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 9.9e-09 63.9 66 53.0
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 9.9e-09 63.9 64 56.2
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 9.9e-09 63.9 64 56.2
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 2.2e-08 62.8 66 53.0
BolC8t48196H Brassica oleracea HOM05D005155 ORTHO05D006266 2.9e-08 62.4 58 62.1
CARHR092210 Cardamine hirsuta HOM05D000660 ORTHO05D003823 2.9e-08 62.4 39 84.6
Sp3g15170 Schrenkiella parvula HOM05D000660 ORTHO05D003823 2.9e-08 62.4 39 84.6
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 3.8e-08 62.0 66 51.5
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 3.8e-08 62.0 66 50.0
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 4.9e-08 61.6 66 48.5
AT3G16940 Arabidopsis thaliana HOM05D000660 ORTHO05D003823 6.4e-08 61.2 39 82.1
Carub.0003s1669 Capsella rubella HOM05D000660 ORTHO05D003823 6.4e-08 61.2 39 82.1
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 6.4e-08 61.2 66 53.0
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 8.4e-08 60.8 64 53.1
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 1.1e-07 60.5 66 53.0
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.1e-07 60.5 66 50.0
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 1.4e-07 60.1 98 42.9
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 1.4e-07 60.1 64 53.1
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.9e-07 59.7 66 50.0
BcaC05g28839 Brassica carinata HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
A05p32730 Brassica napus HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
C05p49450 Brassica napus HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
BolC5t33692H Brassica oleracea HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
BraA05t22095Z Brassica rapa HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
Thhalv10020047m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 1.9e-07 59.7 39 79.5
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.4e-07 59.3 64 53.1
AL3G29920 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 3.2e-07 58.9 39 79.5
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.2e-07 58.9 64 51.6
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 3.2e-07 58.9 66 50.0
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 3.2e-07 58.9 66 48.5
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.2e-07 58.9 52 53.8
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 3.2e-07 58.9 66 48.5
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 3.2e-07 58.9 66 48.5
BcaB06g25786 Brassica carinata HOM05D000660 ORTHO05D003823 4.2e-07 58.5 39 76.9
Aa31LG8G4000 Aethionema arabicum HOM05D000660 ORTHO05D003823 5.5e-07 58.2 39 79.5
Thhalv10024342m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 5.5e-07 58.2 39 76.9
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 5.5e-07 58.2 83 45.8
THA.LOC104802602 Tarenaya hassleriana HOM05D000660 ORTHO05D003823 5.5e-07 58.2 39 76.9
A08p12400 Brassica napus HOM05D000660 ORTHO05D003823 9.3e-07 57.4 41 73.2
PGR004G1371 Punica granatum HOM05D000660 ORTHO05D003823 9.3e-07 57.4 39 74.4
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 9.3e-07 57.4 65 47.7
AL7G38970 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
BcaB04g18367 Brassica carinata HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
BcaC07g37956 Brassica carinata HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
BolC8t48338H Brassica oleracea HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
BraA08t33216Z Brassica rapa HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
Carub.0007s2541 Capsella rubella HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
CARHR222510 Cardamine hirsuta HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
Sp7g14650 Schrenkiella parvula HOM05D000660 ORTHO05D003823 1.2e-06 57.0 39 74.4
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.2e-06 57.0 92 41.3
Aa31LG10G5980 Aethionema arabicum HOM05D000660 ORTHO05D003823 1.6e-06 56.6 39 71.8
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 2.1e-06 56.2 95 44.2
Sabra08G0081600 Salix brachista HOM05D000660 ORTHO05D003823 2.1e-06 56.2 38 73.7
FvH4_4g19400 Fragaria vesca HOM05D000660 ORTHO05D003823 2.7e-06 55.8 41 68.3
FAN12G0613 Fragaria x ananassa HOM05D000660 ORTHO05D003823 2.7e-06 55.8 41 68.3
FAN12G4342 Fragaria x ananassa HOM05D000660 ORTHO05D003823 2.7e-06 55.8 41 68.3
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 2.7e-06 55.8 94 43.6
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 3.5e-06 55.5 64 51.6
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 4.6e-06 55.1 66 48.5
Cpa.g.sc929.1 Carica papaya HOM05D000660 ORTHO05D003823 4.6e-06 55.1 52 57.7
Haze_01267 Corylus avellana HOM05D000660 ORTHO05D003823 7.9e-06 54.3 39 69.2


User provided reference genes

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