Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p29300 Brassica napus HOM05D001817 ORTHO05D001647 1.0e-66 256.5 125 100.0
BcaC03g16784 Brassica carinata HOM05D001817 ORTHO05D001647 2.8e-64 248.4 125 96.0
C02p46550 Brassica napus HOM05D001817 ORTHO05D001647 1.1e-63 246.5 125 95.2
BcaB07g30433 Brassica carinata HOM05D001817 ORTHO05D001647 2.0e-54 215.7 126 84.9
BraA02t07960Z Brassica rapa HOM05D001817 ORTHO05D001647 1.7e-45 186.0 89 100.0
BolC2t10708H Brassica oleracea HOM05D001817 ORTHO05D001647 1.1e-44 183.3 89 97.8
BcaB07g30432 Brassica carinata HOM05D001817 ORTHO05D001647 1.5e-41 172.9 113 73.5
BcaC03g16785 Brassica carinata HOM05D001817 ORTHO05D001647 2.2e-40 169.1 113 74.3
C02p46580 Brassica napus HOM05D001817 ORTHO05D001647 3.7e-40 168.3 113 73.5
A02p29320 Brassica napus HOM05D001817 ORTHO05D001647 4.8e-40 167.9 113 73.5
A02p29330 Brassica napus HOM05D001817 ORTHO05D001647 1.1e-39 166.8 113 72.6
C02p46590 Brassica napus HOM05D001817 ORTHO05D028283 2.0e-30 136.0 95 71.6
AL7G19750 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.0e-22 109.4 119 52.9
BolC1t00680H Brassica oleracea HOM05D001817 ORTHO05D001647 3.0e-21 105.5 126 48.4
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 6.6e-21 104.4 123 52.0
AL7G19780 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 3.3e-20 102.1 98 56.1
AT4G32105 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 3.3e-20 102.1 120 53.3
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 5.6e-20 101.3 120 48.3
AT4G32110 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 4.7e-19 98.2 120 50.8
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 4.7e-19 98.2 118 48.3
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 6.2e-19 97.8 119 47.1
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 8.0e-19 97.4 119 47.1
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 8.0e-19 97.4 119 47.1
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 1.1e-18 97.1 118 46.6
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 1.1e-18 97.1 118 46.6
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-18 97.1 115 44.3
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-18 97.1 115 44.3
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.1e-18 97.1 115 44.3
Sp7g29900 Schrenkiella parvula HOM05D001817 ORTHO05D001647 1.4e-18 96.7 127 47.2
CARHR240020 Cardamine hirsuta HOM05D001817 ORTHO05D001647 1.8e-18 96.3 121 46.3
AT4G32100 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 2.3e-18 95.9 118 47.5
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 4.0e-18 95.1 118 46.6
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 6.8e-18 94.4 117 47.0
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 6.8e-18 94.4 117 47.0
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 6.8e-18 94.4 117 47.0
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 1.2e-17 93.6 118 46.6
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 4.4e-17 91.7 118 45.8
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 1.7e-16 89.7 117 47.9
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 2.9e-16 89.0 118 44.1
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 6.4e-16 87.8 117 41.0
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 6.4e-16 87.8 128 44.5
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 8.3e-16 87.4 117 40.2
C01p07490 Brassica napus HOM05D001817 ORTHO05D001647 1.4e-15 86.7 117 39.3
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 1.9e-15 86.3 117 40.2
SpUn0983_0020 Schrenkiella parvula HOM05D001817 ORTHO05D001647 1.6e-14 83.2 98 48.0
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 2.1e-14 82.8 90 46.7
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-14 82.8 90 46.7
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 2.1e-14 82.8 90 46.7
BcaC06g34407 Brassica carinata HOM05D001817 ORTHO05D001647 3.5e-14 82.0 95 44.2
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 3.5e-14 82.0 96 44.8
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 1.7e-13 79.7 93 46.2
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 1.7e-13 79.7 96 43.8
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 3.0e-13 79.0 115 40.0
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 6.6e-13 77.8 116 40.5
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 8.6e-13 77.4 115 37.4
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 1.1e-12 77.0 119 40.3
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 4.3e-12 75.1 116 41.4
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 4.3e-12 75.1 115 38.3
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 7.3e-12 74.3 117 37.6
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 7.3e-12 74.3 111 41.4
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 9.5e-12 73.9 117 41.0
C01p07500 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-11 73.6 104 43.3
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.2e-11 73.6 115 40.9
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.2e-11 73.6 115 40.9
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.2e-11 73.6 96 42.7
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-11 73.6 112 39.3
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-11 73.2 115 40.9
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 1.6e-11 73.2 113 38.9
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.1e-11 72.8 115 40.9
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.1e-11 72.8 96 42.7
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.1e-11 72.8 110 40.9
Sp2g10650 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.1e-11 72.8 116 43.1
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.8e-11 72.4 85 43.5
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 3.6e-11 72.0 101 39.6
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 4.7e-11 71.6 111 36.9
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 6.2e-11 71.2 115 39.1
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 6.2e-11 71.2 117 36.8
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 6.2e-11 71.2 94 41.5
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 1.4e-10 70.1 112 38.4
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.4e-10 70.1 112 36.6
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 1.8e-10 69.7 116 39.7
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 1.8e-10 69.7 111 41.4
arahy.Tifrunner.gnm1.ann1.P3P3AQ Arachis hypogaea HOM05D001817 ORTHO05D001647 2.3e-10 69.3 113 36.3
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 2.3e-10 69.3 96 39.6
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 2.3e-10 69.3 110 38.2
arahy.Tifrunner.gnm1.ann1.2D36J9 Arachis hypogaea HOM05D001817 ORTHO05D001647 3.1e-10 68.9 94 37.2
Medtr2g438190 Medicago truncatula HOM05D001817 ORTHO05D001647 4.0e-10 68.6 109 35.8
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 5.2e-10 68.2 116 34.5
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 5.2e-10 68.2 111 34.2
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 6.8e-10 67.8 109 36.7
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 6.8e-10 67.8 87 41.4
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 8.9e-10 67.4 117 36.8
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 1.2e-09 67.0 107 35.5
VMungo0720G3158 Vigna mungo HOM05D001817 ORTHO05D001647 1.2e-09 67.0 95 38.9
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 1.5e-09 66.6 96 38.5
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 1.5e-09 66.6 107 33.6
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.0e-09 66.2 91 39.6
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.0e-09 66.2 92 37.0
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 2.0e-09 66.2 114 36.0
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 2.0e-09 66.2 113 35.4
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 2.6e-09 65.9 107 35.5
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.6e-09 65.9 108 38.9
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.6e-09 65.9 108 38.9
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 4.4e-09 65.1 119 37.8
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 5.8e-09 64.7 92 38.0
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.8e-09 64.7 113 38.9
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 7.5e-09 64.3 86 39.5
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 7.5e-09 64.3 111 33.3
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 9.9e-09 63.9 102 39.2
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 9.9e-09 63.9 119 38.7
Medtr8g042530 Medicago truncatula HOM05D001817 ORTHO05D001647 9.9e-09 63.9 113 31.9
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 9.9e-09 63.9 114 37.7
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 9.9e-09 63.9 89 37.1
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 9.9e-09 63.9 106 34.9
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 1.3e-08 63.5 108 33.3
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 1.3e-08 63.5 108 33.3
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 1.3e-08 63.5 112 33.9
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 1.3e-08 63.5 93 38.7
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.3e-08 63.5 96 35.4
DCAR_004364 Daucus carota HOM05D001817 ORTHO05D001647 2.2e-08 62.8 77 42.9
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 2.2e-08 62.8 95 41.1
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 2.9e-08 62.4 104 40.4
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 2.9e-08 62.4 109 37.6
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 2.9e-08 62.4 112 33.9
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 2.9e-08 62.4 106 35.8
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 2.9e-08 62.4 102 35.3
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 3.7e-08 62.0 115 34.8
Lj4g0004287 Lotus japonicus HOM05D001817 ORTHO05D001647 3.7e-08 62.0 102 33.3
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 4.9e-08 61.6 114 33.3
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.9e-08 61.6 86 38.4
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 4.9e-08 61.6 113 34.5
Actinidia22324 Actinidia chinensis HOM05D001817 ORTHO05D001647 6.4e-08 61.2 91 36.3
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 6.4e-08 61.2 105 38.1
Sabra06G0201500 Salix brachista HOM05D001817 ORTHO05D001647 6.4e-08 61.2 117 35.9
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 6.4e-08 61.2 111 31.5
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 8.3e-08 60.8 120 33.3
A01p06740 Brassica napus HOM05D001817 ORTHO05D001647 8.3e-08 60.8 76 39.5
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 8.3e-08 60.8 110 34.5
MD15G1128900 Malus domestica HOM05D001817 ORTHO05D001647 1.4e-07 60.1 80 42.5
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.4e-07 60.1 106 34.0
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 1.4e-07 60.1 109 34.9
arahy.Tifrunner.gnm1.ann1.07A84U Arachis hypogaea HOM05D001817 ORTHO05D001647 1.9e-07 59.7 114 29.8
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 1.9e-07 59.7 120 35.0
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 2.4e-07 59.3 122 32.8
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 2.4e-07 59.3 111 33.3
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.4e-07 59.3 87 41.4
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 2.4e-07 59.3 87 35.6
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 3.2e-07 58.9 111 34.2
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.1e-07 58.5 107 33.6
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 5.4e-07 58.2 101 33.7
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 5.4e-07 58.2 111 37.8
Manes.16G124600 Manihot esculenta HOM05D001817 ORTHO05D001647 5.4e-07 58.2 88 39.8
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 5.4e-07 58.2 113 31.9
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 7.1e-07 57.8 116 29.3
C07p59090 Brassica napus HOM05D001817 ORTHO05D001647 1.2e-06 57.0 106 33.0
BolC7t46357H Brassica oleracea HOM05D001817 ORTHO05D001647 1.2e-06 57.0 106 33.0
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.2e-06 57.0 82 37.8
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-06 57.0 108 34.3
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-06 57.0 88 37.5
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 1.6e-06 56.6 115 32.2
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 1.6e-06 56.6 100 39.0
Sc23g0006630 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.6e-06 56.6 124 32.3
BraA03t15168Z Brassica rapa HOM05D001817 ORTHO05D001647 3.5e-06 55.5 106 32.1
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 3.5e-06 55.5 96 32.3
Phvul.008G024700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-06 55.5 86 40.7
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 3.5e-06 55.5 87 35.6
Haze_21485 Corylus avellana HOM05D001817 ORTHO05D001647 4.6e-06 55.1 74 40.5
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 6.0e-06 54.7 119 32.8
Phvul.009G216600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 6.0e-06 54.7 100 35.0
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 7.8e-06 54.3 80 40.0
CANSAT25G3871 Cannabis sativa HOM05D001817 ORTHO05D001647 7.8e-06 54.3 103 35.0
Lj4g0014854 Lotus japonicus HOM05D001817 ORTHO05D001647 7.8e-06 54.3 119 32.8
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 7.8e-06 54.3 119 34.5


User provided reference genes

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