Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 3.7e-91 338.2 170 100.0
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 3.7e-91 338.2 170 100.0
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 4.1e-74 281.6 176 84.1
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 9.1e-74 280.4 176 82.4
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.2e-68 263.5 172 78.5
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 2.6e-68 262.3 169 79.9
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 9.8e-68 260.4 170 77.6
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 2.0e-57 226.1 170 71.2
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.5e-47 193.4 180 59.4
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.5e-47 193.4 180 59.4
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 4.0e-45 185.3 173 59.5
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 9.8e-44 180.6 173 55.5
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 3.7e-43 178.7 174 52.9
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 8.3e-43 177.6 173 55.5
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 1.9e-42 176.4 173 54.9
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 3.2e-42 175.6 166 56.0
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.2e-41 173.7 170 51.8
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.6e-41 173.3 171 51.5
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.6e-41 173.3 171 51.5
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 2.0e-41 172.9 171 53.8
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 7.8e-41 171.0 173 54.3
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 1.0e-40 170.6 171 54.4
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.3e-40 170.2 119 65.5
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 2.3e-40 169.5 171 53.8
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.9e-40 168.7 178 53.4
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.9e-40 168.7 178 53.4
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.1e-39 167.2 167 52.1
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.1e-39 167.2 172 51.7
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 1.1e-39 167.2 174 52.9
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.1e-39 167.2 124 66.1
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 1.5e-39 166.8 166 53.6
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.5e-39 166.8 173 53.8
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 1.5e-39 166.8 170 54.7
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 5.6e-39 164.9 174 51.1
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 9.5e-39 164.1 172 51.2
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 1.2e-38 163.7 197 48.2
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.2e-38 163.7 173 53.8
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.6e-38 163.3 132 63.6
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 1.6e-38 163.3 177 54.2
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 2.1e-38 162.9 112 76.8
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 2.1e-38 162.9 170 52.4
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 2.1e-38 162.9 123 65.0
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 6.2e-38 161.4 184 47.8
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 8.1e-38 161.0 143 57.3
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 8.1e-38 161.0 172 51.2
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 8.1e-38 161.0 171 52.6
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.8e-37 159.8 164 51.8
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.8e-37 159.8 144 59.0
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 2.3e-37 159.5 176 48.9
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 3.1e-37 159.1 149 57.7
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 4.0e-37 158.7 124 61.3
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 4.0e-37 158.7 175 50.3
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 4.0e-37 158.7 196 46.9
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 4.0e-37 158.7 154 56.5
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 6.8e-37 157.9 189 48.7
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 8.9e-37 157.5 171 52.6
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 2.6e-36 156.0 181 49.2
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 2.6e-36 156.0 119 64.7
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 2.6e-36 156.0 171 52.0
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.4e-36 155.6 181 50.3
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 5.8e-36 154.8 177 49.2
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 5.8e-36 154.8 196 47.4
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 9.8e-36 154.1 177 50.8
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 9.8e-36 154.1 121 62.0
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.9e-35 152.5 144 55.6
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 4.9e-35 151.8 170 50.6
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 4.9e-35 151.8 227 41.9
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 6.4e-35 151.4 165 50.9
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 6.4e-35 151.4 182 48.4
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 8.3e-35 151.0 152 54.6
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.1e-34 150.6 200 45.5
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 1.9e-34 149.8 151 58.3
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 3.2e-34 149.1 168 47.6
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 1.5e-31 140.2 211 39.8
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.9e-31 139.8 128 55.5
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.9e-31 139.8 171 47.4
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.3e-31 139.0 131 58.0
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 3.6e-30 135.6 85 72.9
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.4e-29 133.7 108 61.1
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 1.8e-29 133.3 174 46.0
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 5.2e-29 131.7 166 45.8
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 1.5e-28 130.2 116 56.0
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 2.9e-27 125.9 173 43.9
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 1.9e-26 123.2 118 58.5
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 3.2e-26 122.5 120 53.3
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 4.1e-26 122.1 100 56.0
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 5.4e-26 121.7 104 57.7
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 7.8e-25 117.9 96 58.3
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 5.1e-24 115.2 98 58.2
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 6.6e-24 114.8 168 42.3
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 1.5e-23 113.6 109 60.6
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 2.5e-23 112.8 95 53.7
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 8.1e-22 107.8 121 48.8
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 8.9e-21 104.4 100 51.0
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 7.6e-20 101.3 100 59.0
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.6e-17 93.6 156 36.5
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 8.7e-16 87.8 133 40.6
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 7.3e-15 84.7 104 46.2
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.4e-13 80.5 161 38.5
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 1.8e-13 80.1 54 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 3.8e-11 72.4 75 49.3
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 3.3e-07 59.3 76 44.7
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 4.3e-07 58.9 105 38.1
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 5.6e-07 58.5 104 36.5
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 2.1e-06 56.6 56 46.4
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.1e-06 56.6 82 41.5
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 2.8e-06 56.2 82 40.2
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 3.7e-06 55.8 88 42.0
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 40.6
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 4.8e-06 55.5 102 36.3
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 6.2e-06 55.1 59 44.1
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 6.2e-06 55.1 100 34.0
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 6.2e-06 55.1 71 42.3
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 8.1e-06 54.7 66 43.9


User provided reference genes

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