Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p26810 Brassica napus HOM05D049604 ORTHO05D042916 2.2e-70 268.9 135 100.0
BraA02t07688Z Brassica rapa HOM05D049604 ORTHO05D042916 4.9e-54 214.5 109 100.0
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 3.1e-08 62.4 44 68.2
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 2.0e-07 59.7 44 65.9
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 2.6e-07 59.3 44 63.6
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 3.4e-07 58.9 44 63.6
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 61.4
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 4.5e-07 58.5 44 63.6
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 5.8e-07 58.2 44 63.6
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 5.8e-07 58.2 44 63.6
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 5.8e-07 58.2 44 63.6
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 5.8e-07 58.2 44 63.6
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 7.6e-07 57.8 44 61.4
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 7.6e-07 57.8 44 59.1
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 7.6e-07 57.8 44 63.6
Thecc.01G198100 Theobroma cacao HOM05D003366 ORTHO05D004045 7.6e-07 57.8 44 63.6
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 1.0e-06 57.4 44 61.4
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 1.0e-06 57.4 44 61.4
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.3e-06 57.0 44 61.4
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 1.3e-06 57.0 44 56.8
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 59.1
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 59.1
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 1.7e-06 56.6 44 61.4
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 59.1
Aqoxy1G04276 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 59.1
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 59.1
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 61.4
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 61.4
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 59.1
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 61.4
Sc21g0000490 Simmondsia chinensis HOM05D003366 ORTHO05D004045 2.2e-06 56.2 44 59.1
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
CDE02G1466 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 2.9e-06 55.8 60 46.7
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 2.9e-06 55.8 44 59.1
Actinidia35201 Actinidia chinensis HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
C03p53670 Brassica napus HOM05D003366 ORTHO05D031881 3.8e-06 55.5 102 38.2
BolC3t17627H Brassica oleracea HOM05D003366 ORTHO05D031881 3.8e-06 55.5 102 38.2
CAN.G126.88 Capsicum annuum HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 3.8e-06 55.5 44 59.1
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 4.9e-06 55.1 44 56.8
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 4.9e-06 55.1 44 59.1
TPR.G20196 Trifolium pratense HOM05D003366 ORTHO05D004045 4.9e-06 55.1 44 59.1
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 4.9e-06 55.1 44 59.1
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 56.8
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 56.8
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 56.8
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 59.1
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 59.1
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 6.5e-06 54.7 44 59.1
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 59.1
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 8.4e-06 54.3 44 56.8


User provided reference genes

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