Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1563.1 861 100.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1496.1 861 95.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 0.0e+00 1483.0 888 93.9
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1482.2 883 93.0
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1454.1 871 92.4
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1380.2 863 89.3
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 0.0e+00 1285.8 866 83.0
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1174.5 863 75.9
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1172.5 863 75.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 0.0e+00 1169.1 859 74.7
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1168.7 857 75.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 0.0e+00 1162.1 861 76.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 0.0e+00 1129.4 875 72.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.9e-301 1038.5 862 69.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 5.3e-295 1017.7 869 68.0
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 8.4e-293 1010.4 832 70.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.8e-290 1002.7 858 67.5
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.9e-285 985.3 857 64.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.5e-284 982.2 874 66.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.7e-272 941.8 855 64.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-241 838.2 772 66.6
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 2.8e-219 766.1 897 50.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.6e-219 765.8 915 52.7
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.9e-215 753.4 904 51.2
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.2e-214 750.7 868 52.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.7e-214 749.6 886 52.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 7.8e-214 748.0 892 50.9
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.3e-212 742.7 892 50.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.6e-212 741.9 891 53.8
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.6e-211 740.3 891 53.9
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.6e-211 739.2 891 49.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 4.7e-211 738.8 911 50.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-210 737.6 875 52.3
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.4e-209 732.3 885 50.4
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 4.4e-209 732.3 863 52.0
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 5.8e-209 731.9 889 49.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 8.4e-208 728.0 887 52.0
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 5.4e-207 725.3 889 50.2
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.1e-206 723.4 900 51.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 6.6e-205 718.4 886 49.3
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.9e-204 716.8 880 50.0
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.5e-204 716.5 904 50.9
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 7.3e-204 714.9 887 49.3
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.1e-203 713.4 892 49.6
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.1e-202 711.1 878 50.0
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.1e-202 711.1 871 49.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.4e-202 710.7 909 48.7
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 4.0e-202 709.1 887 48.0
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.2e-201 707.6 876 49.0
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 9.9e-201 704.5 838 52.3
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-199 701.0 852 51.6
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 7.1e-199 698.4 891 49.2
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.1e-198 696.8 906 48.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 7.8e-198 694.9 870 49.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.8e-198 694.9 878 49.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.9e-197 692.6 886 47.1
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 5.1e-197 692.2 825 51.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 6.6e-197 691.8 890 48.8
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 3.3e-196 689.5 881 48.6
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.1e-195 686.8 876 48.1
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.8e-195 685.6 890 47.3
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 9.0e-194 681.4 881 47.4
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 2.0e-193 680.2 862 49.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.8e-193 678.7 894 48.5
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.8e-192 676.0 880 49.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.4e-191 673.3 882 49.4
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.6e-190 670.6 894 46.9
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.7e-190 669.8 885 49.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 4.6e-190 669.1 826 50.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 6.0e-190 668.7 884 48.6
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 7.9e-190 668.3 891 47.1
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-189 667.5 889 48.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.9e-189 666.0 880 48.5
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 5.1e-189 665.6 880 47.7
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 5.1e-189 665.6 916 48.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 6.7e-189 665.2 896 47.5
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-188 664.1 892 49.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-188 663.3 882 49.9
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 2.5e-188 663.3 882 49.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 5.6e-188 662.1 898 47.0
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.6e-187 660.6 907 45.9
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.1e-186 656.4 884 48.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 4.0e-186 656.0 892 49.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 5.3e-186 655.6 900 49.0
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.0e-184 651.4 892 46.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.3e-184 651.0 890 47.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 4.9e-184 649.0 817 50.9
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 6.5e-184 648.7 889 49.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 4.2e-183 646.0 836 48.2
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 5.5e-183 645.6 894 46.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.2e-182 644.4 860 49.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.1e-182 643.7 881 48.0
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.5e-182 642.9 844 49.1
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.5e-180 636.7 879 46.0
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.9e-175 620.5 865 47.6
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.6e-174 617.5 915 44.2
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.1e-174 617.1 889 46.8
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.9e-173 612.8 872 46.0
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 5.1e-173 612.5 869 46.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-172 611.3 839 46.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.5e-172 610.1 738 49.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.8e-171 606.7 885 44.9
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.1e-170 603.2 838 45.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 2.1e-166 590.5 878 46.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 7.9e-166 588.6 818 47.4
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.7e-165 585.5 885 42.8
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.2e-163 580.5 882 43.1
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.2e-163 580.5 875 45.1
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-162 577.8 399 83.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.9e-162 575.5 776 48.1
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.6e-161 573.5 888 42.2
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.4e-159 567.8 863 46.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.9e-159 567.4 380 84.2
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-158 563.9 380 83.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 4.7e-158 562.8 389 82.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.3e-155 554.7 877 40.7
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 6.3e-155 552.4 343 89.5
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-153 547.4 752 47.3
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 5.2e-149 532.7 777 46.1
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 3.8e-144 516.5 861 40.8
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.6e-142 510.0 613 48.5
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-138 498.4 380 76.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.0e-133 479.9 577 52.2
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 4.0e-133 479.9 279 93.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 9.1e-130 468.8 645 48.8
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.9e-127 461.1 644 47.4
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-127 461.1 344 76.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.4e-124 450.3 1064 36.7
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 2.9e-120 437.2 854 40.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.8e-117 427.9 289 84.1
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 1.7e-112 411.4 287 83.3
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-111 408.3 288 83.0
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 8.9e-109 399.1 823 36.8
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 5.6e-103 379.8 897 35.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-102 378.6 286 77.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-101 375.6 286 77.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 5.2e-101 373.2 436 50.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.6e-97 361.7 411 52.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 3.9e-96 357.1 1058 33.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 5.4e-90 336.7 440 48.0
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 5.3e-85 320.1 986 33.2
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 7.4e-79 299.7 469 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.6e-76 289.7 915 32.0
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-71 274.6 194 78.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 4.8e-70 270.4 160 91.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.5e-68 265.4 335 45.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.6e-68 263.1 252 56.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-66 258.8 273 52.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 4.2e-66 257.3 977 27.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 3.3e-63 247.7 328 44.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 4.8e-62 243.8 224 58.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 8.2e-62 243.0 205 60.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.5e-60 238.8 714 30.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-54 218.4 315 46.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.2e-54 218.4 828 29.0
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 5.3e-45 187.2 458 33.2
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.6e-39 168.3 176 56.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.3e-39 167.9 174 58.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-36 159.1 200 46.5
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.0e-36 158.7 682 27.4
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.5e-34 151.8 346 35.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-32 146.0 153 52.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.6e-31 141.7 172 45.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.1e-25 122.1 237 35.9
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.8e-24 119.0 129 47.3
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-24 119.0 127 54.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 9.8e-23 113.2 194 42.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-21 109.8 122 54.1
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.4e-21 107.5 972 22.4
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 8.3e-14 83.6 817 21.9
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 1.6e-12 79.3 52 86.5
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 4.5e-12 77.8 59 71.2
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 6.6e-11 73.9 82 52.4
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 7.3e-10 70.5 267 28.8
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 6.1e-09 67.4 175 25.7
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 1.0e-08 66.6 38 84.2
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 8.3e-06 57.0 82 43.9


User provided reference genes

Program Settings