Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-70 270.0 139 100.0
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.0e-70 270.0 139 100.0
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.0e-70 270.0 139 100.0
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.0e-70 270.0 139 100.0
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.0e-70 270.0 139 100.0
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.8e-67 259.2 142 95.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.8e-67 259.2 142 94.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-66 256.5 142 95.1
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-66 256.5 142 95.1
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-66 255.8 141 95.0
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-66 255.4 142 94.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.6e-66 255.4 142 94.4
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 94.3
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 94.3
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 94.3
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 5.7e-66 254.2 141 94.3
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 5.7e-66 254.2 141 94.3
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 7.5e-66 253.8 142 94.4
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 4.8e-65 251.1 142 93.7
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 4.8e-65 251.1 142 93.7
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 6.3e-65 250.8 141 92.9
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 8.3e-65 250.4 141 92.9
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.4e-64 249.6 141 92.2
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.2e-63 246.5 142 90.1
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 5.5e-61 237.7 133 92.5
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.0e-55 219.2 139 81.3
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.0e-54 216.9 141 81.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-53 213.4 141 80.1
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.1e-53 213.4 141 80.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 79.4
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.5e-53 213.0 135 81.5
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 77.3
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 81.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.9e-53 212.6 139 79.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.9e-53 212.6 139 79.1
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 76.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 78.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 75.4
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 80.1
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 9.5e-53 210.3 139 76.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.2e-52 209.9 141 76.6
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 74.3
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 78.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.6e-52 209.5 138 76.1
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.1e-52 209.1 139 77.7
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 77.3
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 77.3
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 79.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.1e-52 207.6 140 77.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.0e-52 207.2 139 77.7
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.0e-52 207.2 142 74.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.0e-51 206.8 142 77.5
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 78.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 74.6
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.0e-51 205.3 142 77.5
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 3.0e-51 205.3 138 74.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.0e-51 205.3 139 77.0
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 77.3
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.0e-51 204.9 139 77.7
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.2e-51 204.5 141 75.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 6.8e-51 204.1 139 73.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 6.8e-51 204.1 139 74.8
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.2e-50 203.4 141 74.5
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.2e-50 203.4 141 75.2
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 75.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 76.6
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.0e-50 202.6 140 74.3
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 76.6
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 76.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.4e-50 201.8 137 73.7
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 5.7e-50 201.1 138 73.2
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 7.5e-50 200.7 139 74.8
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 7.5e-50 200.7 139 72.7
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 9.8e-50 200.3 141 73.8
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 9.8e-50 200.3 140 72.9
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 74.5
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 74.3
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 135 76.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.7e-49 198.4 143 74.8
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 75.2
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 73.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 74.1
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 71.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.4e-48 196.4 139 75.5
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 75.2
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 74.1
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 3.2e-48 195.3 139 71.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.1e-48 194.9 143 73.4
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.4e-48 194.5 141 73.8
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.4e-48 194.5 140 75.0
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 5.4e-48 194.5 141 74.5
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 7.0e-48 194.1 139 71.9
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 7.0e-48 194.1 139 72.7
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 74.5
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 74.5
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 73.0
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.6e-47 193.0 156 72.4
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.0e-47 192.6 141 71.6
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 4.6e-47 191.4 140 72.9
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 7.8e-47 190.7 140 74.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.8e-47 190.7 139 73.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.8e-47 190.7 139 73.4
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.0e-46 190.3 138 72.5
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.3e-46 189.9 138 71.7
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.3e-46 189.9 137 74.5
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-46 189.1 145 73.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 6.6e-46 187.6 143 68.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.1e-45 186.8 137 73.0
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.5e-45 185.7 143 72.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 5.6e-45 184.5 142 69.0
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.3e-45 184.1 142 71.8
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 7.3e-45 184.1 139 71.9
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-44 183.3 144 69.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.1e-44 182.6 142 69.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 2.8e-44 182.2 138 70.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.8e-44 182.2 139 69.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.3e-43 179.1 141 69.5
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.1e-43 178.7 138 70.3
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 4.0e-43 178.3 140 70.0
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 6.8e-43 177.6 141 69.5
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.2e-42 176.8 135 70.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 69.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 135 68.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 3.4e-42 175.3 135 68.9
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 4.4e-42 174.9 140 67.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.4e-42 174.9 143 67.8
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.4e-42 174.9 143 67.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.3e-41 173.3 140 67.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 6.4e-41 171.0 140 64.3
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.7e-39 165.6 138 63.8
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-38 163.3 137 65.0
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.3e-37 158.7 139 62.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 4.3e-37 158.3 158 58.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 7.3e-37 157.5 139 64.0
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.6e-36 156.4 141 62.4
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.1e-36 156.0 111 71.2
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.6e-36 155.2 154 59.7
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.8e-35 152.9 91 82.4
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.8e-35 151.0 138 60.1
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 4.4e-34 148.3 88 80.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.1e-32 143.7 119 59.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.1e-32 141.7 123 62.6
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 9.2e-32 140.6 118 59.3
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.0e-30 137.1 114 66.7
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.9e-29 132.9 119 59.7
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.5e-29 132.5 141 58.2
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.3e-29 132.1 91 81.3
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.6e-29 131.3 142 53.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 54.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.7e-28 128.3 118 57.6
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.8e-27 126.3 90 72.2
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 51.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.3e-27 125.9 138 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 3.1e-27 125.6 141 51.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.7e-22 109.8 90 65.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 4.3e-21 105.1 138 43.5
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 6.8e-19 97.8 139 46.0
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 2.6e-18 95.9 53 83.0
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 9.9e-18 94.0 67 64.2
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.3e-17 93.6 79 64.6
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 8.4e-17 90.9 135 43.7
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.8e-12 75.1 86 57.0
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 2.7e-07 59.3 133 36.8


User provided reference genes

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