Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-41 171.8 81 100.0
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 2.2e-41 171.8 81 100.0
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 4.8e-41 170.6 81 98.8
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 4.8e-41 170.6 81 98.8
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 4.5e-39 164.1 81 93.8
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 4.5e-39 164.1 81 93.8
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 2.3e-38 161.8 93 86.0
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-32 141.7 81 77.8
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 7.0e-32 140.2 81 77.8
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 1.6e-31 139.0 81 76.5
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-31 138.7 81 74.1
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 3.5e-31 137.9 81 75.3
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 3.5e-31 137.9 81 75.3
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.5e-31 137.9 81 75.3
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 5.9e-31 137.1 81 75.3
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.9e-31 137.1 81 77.8
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 7.8e-31 136.7 81 75.3
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 7.8e-31 136.7 81 75.3
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 7.8e-31 136.7 81 75.3
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 1.0e-30 136.3 81 75.3
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 1.0e-30 136.3 81 75.3
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.7e-30 135.6 81 76.5
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-30 135.6 81 76.5
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.8e-30 134.4 81 75.3
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.8e-30 134.4 81 76.5
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 6.6e-30 133.7 81 72.8
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.6e-30 133.3 81 71.6
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.9e-29 132.1 81 71.6
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.9e-29 132.1 81 74.1
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.9e-29 132.1 81 75.3
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.3e-29 131.3 81 72.8
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 72.8
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 7.3e-29 130.2 81 71.6
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 7.3e-29 130.2 81 72.8
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 7.3e-29 130.2 81 71.6
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 7.3e-29 130.2 81 70.4
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 9.5e-29 129.8 81 71.6
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.2e-28 129.4 81 74.1
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.2e-28 129.4 81 72.8
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 2.1e-28 128.6 81 70.4
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 2.1e-28 128.6 81 70.4
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.1e-28 128.6 81 70.4
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 2.8e-28 128.3 81 70.4
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 3.6e-28 127.9 81 72.8
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 3.6e-28 127.9 81 72.8
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 3.6e-28 127.9 81 72.8
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 4.7e-28 127.5 81 69.1
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 8.0e-28 126.7 81 70.4
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 8.0e-28 126.7 81 67.9
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.0e-27 124.8 81 70.4
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 5.2e-27 124.0 81 69.1
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 5.2e-27 124.0 81 69.1
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 6.8e-27 123.6 83 69.9
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 8.9e-27 123.2 81 69.1
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 8.9e-27 123.2 83 72.3
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 8.9e-27 123.2 83 72.3
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 8.9e-27 123.2 81 69.1
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 8.9e-27 123.2 83 72.3
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 8.9e-27 123.2 83 72.3
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.5e-26 122.5 81 66.7
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 70.4
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 4.4e-26 120.9 81 70.4
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.7e-25 119.0 81 65.4
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 2.9e-25 118.2 81 66.7
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 4.9e-25 117.5 81 67.9
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 8.3e-25 116.7 81 65.4
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.3e-25 116.7 82 64.6
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 1.8e-24 115.5 81 64.2
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 1.8e-24 115.5 81 64.2
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.2e-23 112.8 81 63.0
CARHR069250 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-22 109.0 82 68.3
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.0e-22 108.2 81 64.2
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.0e-22 107.5 65 69.2
AL1G66200 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 6.6e-22 107.1 82 63.4
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 6.6e-22 107.1 81 58.0
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.1e-21 106.3 77 63.6
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.2e-20 102.8 81 59.3
A07p41400 Brassica napus HOM05D002484 ORTHO05D002541 2.1e-20 102.1 81 61.7
CARHR069260 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.4e-19 99.4 81 63.0
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.5e-18 95.9 58 69.0
C04p06240 Brassica napus HOM05D002484 ORTHO05D002541 1.5e-18 95.9 81 53.1
A05p05280 Brassica napus HOM05D002484 ORTHO05D002541 3.4e-18 94.7 80 52.5
C04p06270 Brassica napus HOM05D002484 ORTHO05D002541 3.4e-18 94.7 81 53.1
A05p05270 Brassica napus HOM05D002484 ORTHO05D002541 4.4e-18 94.4 81 53.1
BcaC02g12223 Brassica carinata HOM05D002484 ORTHO05D002541 5.8e-18 94.0 81 53.1
C04p06250 Brassica napus HOM05D002484 ORTHO05D002541 5.8e-18 94.0 81 53.1
A05p05350 Brassica napus HOM05D002484 ORTHO05D002541 7.5e-18 93.6 81 53.1
BraA05t19505Z Brassica rapa HOM05D002484 ORTHO05D002541 7.5e-18 93.6 81 53.1
BcaC02g12225 Brassica carinata HOM05D002484 ORTHO05D002541 1.3e-17 92.8 81 53.1
BcaC02g12226 Brassica carinata HOM05D002484 ORTHO05D002541 1.3e-17 92.8 81 53.1
A06p39910 Brassica napus HOM05D002484 ORTHO05D002541 1.7e-17 92.4 81 51.9
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-17 92.0 82 57.3
BolC4t22248H Brassica oleracea HOM05D002484 ORTHO05D002541 2.9e-17 91.7 81 51.9
BraA06t26906Z Brassica rapa HOM05D002484 ORTHO05D002541 2.9e-17 91.7 81 50.6
Thhalv10000535m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.4e-17 90.5 81 56.8
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 3.2e-16 88.2 82 56.1
BcaB02g08968 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-16 87.8 81 53.1
CARHR216400 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.4e-16 87.4 83 56.6
BcaB02g08940 Brassica carinata HOM05D002484 ORTHO05D002541 7.0e-16 87.0 81 53.1
BcaB05g24949 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-15 86.3 82 53.7
BcaB02g08967 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-15 85.5 81 51.9
BcaC03g15604 Brassica carinata HOM05D002484 ORTHO05D002541 6.0e-15 84.0 87 50.6
BcaB02g08969 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-14 83.2 81 50.6
AT1G55010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.3e-14 82.8 82 50.0
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.0e-14 81.6 82 48.8
AL1G65590 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 6.6e-14 80.5 82 48.8
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 7.3e-13 77.0 81 46.9
BcaC08g47323 Brassica carinata HOM05D002484 ORTHO05D002541 9.5e-13 76.6 47 61.7
Ciclev10029711m.g Citrus clementina HOM05D002484 ORTHO05D002541 9.5e-13 76.6 81 45.7
Carub.0002s0817 Capsella rubella HOM05D002484 ORTHO05D002541 6.2e-12 73.9 82 47.6
Hma1.2p1_1051F.1_g252040 Hydrangea macrophylla HOM05D002484 ORTHO05D002541 6.8e-11 70.5 83 51.8
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 1.5e-10 69.3 59 45.8
BcaC08g47076 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-10 68.9 49 69.4
Aqoxy5G01140 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 5.8e-10 67.4 67 50.7
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 9.9e-10 66.6 81 40.7
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 9.9e-10 66.6 81 40.7
AL8G15430 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.2e-09 65.5 38 86.8
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.2e-09 65.5 83 43.4
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 2.9e-09 65.1 81 44.4
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 3.7e-09 64.7 73 42.5
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.1e-08 63.2 81 37.0
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 1.1e-08 63.2 74 40.5
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-08 62.0 80 36.2
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 2.4e-08 62.0 80 36.2
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 3.2e-08 61.6 82 37.8
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 3.2e-08 61.6 50 46.0
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 3.2e-08 61.6 77 40.3
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 4.1e-08 61.2 79 40.5
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 5.4e-08 60.8 71 39.4
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-08 60.8 77 36.4
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 7.1e-08 60.5 58 43.1
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 7.1e-08 60.5 86 36.0
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 7.1e-08 60.5 81 33.3
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 7.1e-08 60.5 84 42.9
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 7.1e-08 60.5 77 40.3
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 7.1e-08 60.5 52 48.1
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 7.1e-08 60.5 81 33.3
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 9.2e-08 60.1 80 41.2
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 9.2e-08 60.1 80 38.8
BraA07t31673Z Brassica rapa HOM05D002484 ORTHO05D002541 1.2e-07 59.7 40 77.5
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 1.2e-07 59.7 83 44.6
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.2e-07 59.7 64 43.8
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 1.6e-07 59.3 63 38.1
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 2.1e-07 58.9 86 36.0
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 2.1e-07 58.9 86 36.0
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 2.7e-07 58.5 80 32.5
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 2.7e-07 58.5 79 39.2
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 2.7e-07 58.5 78 37.2
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 3.5e-07 58.2 75 34.7
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 4.6e-07 57.8 50 46.0
Sc14g0001850 Simmondsia chinensis HOM05D002484 ORTHO05D002541 6.0e-07 57.4 80 43.8
Sc14g0001860 Simmondsia chinensis HOM05D002484 ORTHO05D002541 6.0e-07 57.4 80 43.8
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 7.8e-07 57.0 75 37.3
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-06 56.6 75 37.3
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.0e-06 56.6 46 47.8
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 1.3e-06 56.2 51 43.1
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 1.3e-06 56.2 79 35.4
ECA236G0419 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.7e-06 55.8 50 50.0
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 3.0e-06 55.1 52 44.2
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 3.9e-06 54.7 75 36.0
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 3.9e-06 54.7 75 36.0
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 3.9e-06 54.7 51 45.1
Medtr8g012870 Medicago truncatula HOM05D002484 ORTHO05D002541 5.1e-06 54.3 74 39.2
Peaxi162Scf00324g00717 Petunia axillaris HOM05D002484 ORTHO05D002541 5.1e-06 54.3 51 49.0
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 5.1e-06 54.3 75 37.3
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 6.6e-06 53.9 81 38.3
Lsat_1_v5_gn_7_90800 Lactuca sativa HOM05D002484 ORTHO05D002541 8.6e-06 53.5 48 43.8
Medtr8g012885 Medicago truncatula HOM05D002484 ORTHO05D002541 8.6e-06 53.5 81 39.5


User provided reference genes

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