Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 2.3e-84 315.5 154 100.0
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 2.3e-84 315.5 154 100.0
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 1.9e-78 295.8 151 96.7
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 8.6e-47 190.7 102 93.1
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 3.4e-35 152.1 99 72.7
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 3.4e-35 152.1 99 72.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 2.2e-34 149.4 99 72.7
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 2.2e-34 149.4 99 72.7
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 8.4e-34 147.5 99 71.7
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 1.1e-33 147.1 99 70.7
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 1.4e-33 146.7 99 70.7
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 2.4e-33 146.0 99 70.7
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 9.2e-33 144.1 99 69.7
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.2e-32 143.7 99 68.7
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 1.6e-32 143.3 99 69.7
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 4.6e-32 141.7 99 67.7
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 4.6e-32 141.7 99 67.7
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 4.6e-32 141.7 99 67.7
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 4.6e-32 141.7 99 67.7
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 6.0e-32 141.4 99 68.7
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 6.0e-32 141.4 99 68.7
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 6.0e-32 141.4 99 68.7
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 1.7e-31 139.8 99 68.7
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 5.1e-31 138.3 99 67.7
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 3.3e-30 135.6 99 64.6
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 3.3e-30 135.6 107 64.5
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 4.3e-30 135.2 99 64.6
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 5.6e-30 134.8 99 63.6
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 1.6e-29 133.3 99 62.6
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 1.7e-26 123.2 99 57.6
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 2.2e-26 122.9 99 56.6
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 3.8e-26 122.1 99 55.6
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 3.8e-26 122.1 99 57.6
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 4.9e-26 121.7 99 56.6
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 6.4e-26 121.3 99 57.6
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 8.4e-26 120.9 97 60.8
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 8.4e-26 120.9 99 57.6
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.4e-25 120.2 99 55.6
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 1.4e-25 120.2 99 55.6
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 1.4e-25 120.2 97 57.7
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 1.4e-25 120.2 97 57.7
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 1.4e-25 120.2 97 57.7
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 1.9e-25 119.8 99 57.6
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 2.4e-25 119.4 99 56.6
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.2e-25 118.6 99 55.6
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 5.4e-25 118.2 99 57.6
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 5.4e-25 118.2 99 55.6
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 5.4e-25 118.2 99 56.6
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 5.4e-25 118.2 99 55.6
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 5.4e-25 118.2 99 54.5
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 7.1e-25 117.9 99 54.5
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 9.3e-25 117.5 99 56.6
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 9.3e-25 117.5 99 55.6
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 1.2e-24 117.1 99 53.5
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.6e-24 116.7 99 57.6
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.6e-24 116.7 96 57.3
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.6e-24 116.7 96 57.3
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.6e-24 116.7 96 57.3
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 2.7e-24 115.9 99 54.5
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 2.7e-24 115.9 99 54.5
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.5e-24 115.5 99 51.5
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 3.5e-24 115.5 99 52.5
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 3.5e-24 115.5 99 52.5
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 3.5e-24 115.5 99 52.5
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 4.6e-24 115.2 96 55.2
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 4.6e-24 115.2 99 54.5
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 4.6e-24 115.2 99 53.5
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 6.0e-24 114.8 99 55.6
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 6.0e-24 114.8 99 53.5
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 6.0e-24 114.8 99 53.5
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 7.8e-24 114.4 99 53.5
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 50.5
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 53.5
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 53.5
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 53.5
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 52.5
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 52.5
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 54.5
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 51.5
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 53.5
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 2.3e-23 112.8 99 52.5
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 2.3e-23 112.8 99 52.5
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 2.3e-23 112.8 99 54.5
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 2.3e-23 112.8 99 54.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 3.0e-23 112.5 99 53.5
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 3.0e-23 112.5 97 53.6
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 3.9e-23 112.1 99 52.5
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 3.9e-23 112.1 99 52.5
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 3.9e-23 112.1 99 52.5
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 5.1e-23 111.7 99 51.5
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 5.1e-23 111.7 99 53.5
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 5.1e-23 111.7 99 53.5
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 6.6e-23 111.3 99 50.5
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 8.7e-23 110.9 99 50.5
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 8.7e-23 110.9 99 48.5
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 1.1e-22 110.5 95 54.7
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 1.5e-22 110.2 99 49.5
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.5e-22 110.2 99 49.5
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.5e-22 110.2 99 49.5
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.5e-22 110.2 99 51.5
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 47.5
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 49.5
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 52.5
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 49.5
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 3.3e-22 109.0 99 48.5
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 4.3e-22 108.6 99 51.5
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 4.3e-22 108.6 99 50.5
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 4.3e-22 108.6 99 50.5
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 5.6e-22 108.2 99 50.5
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 5.6e-22 108.2 99 49.5
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 5.6e-22 108.2 99 51.5
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 7.3e-22 107.8 99 48.5
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 9.6e-22 107.5 96 50.0
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 1.3e-21 107.1 99 48.5
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.6e-21 106.7 99 54.5
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 1.6e-21 106.7 99 48.5
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 2.1e-21 106.3 99 48.5
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 2.8e-21 105.9 99 47.5
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 3.6e-21 105.5 99 48.5
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 4.8e-21 105.1 99 49.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 4.8e-21 105.1 99 53.5
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 2.4e-20 102.8 99 48.5
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 3.1e-20 102.4 99 45.5
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 3.4e-19 99.0 99 45.5
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 5.8e-19 98.2 96 49.0
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 1.7e-18 96.7 97 52.6
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 3.8e-18 95.5 99 44.4
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 8.4e-18 94.4 99 44.4
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 1.1e-17 94.0 120 40.8
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 2.4e-17 92.8 94 45.7
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 3.2e-17 92.4 102 47.1
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 5.4e-17 91.7 68 67.6
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 9.3e-17 90.9 76 53.9
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 1.6e-16 90.1 96 42.7
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.3e-15 87.0 96 42.7
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 7.3e-14 81.3 98 36.7
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.6e-13 80.1 98 35.7
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.8e-13 79.3 98 35.7
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 2.8e-13 79.3 98 35.7
A05p13450 Brassica napus HOM05D003431 ORTHO05D100885 2.6e-11 72.8 89 47.2
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 3.4e-11 72.4 67 49.3
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.4e-09 67.0 48 60.4
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 2.4e-09 66.2 96 34.4
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 1.2e-08 63.9 98 37.8
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 2.1e-08 63.2 52 65.4
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 2.1e-08 63.2 96 29.2
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 2.1e-08 63.2 49 55.1
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 3.5e-08 62.4 52 61.5
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 4.6e-08 62.0 95 31.6
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 7.9e-08 61.2 47 55.3
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 3.0e-07 59.3 69 50.7
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 5.1e-07 58.5 46 67.4
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 8.7e-07 57.8 47 61.7
MELO3C034572.2 Cucumis melo HOM05D003431 ORTHO05D005152 2.5e-06 56.2 46 47.8
CsaV3_1G025580 Cucumis sativus L. HOM05D003431 ORTHO05D005152 2.5e-06 56.2 48 45.8
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 5.6e-06 55.1 51 47.1


User provided reference genes

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