Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15250 Brassica napus HOM05D003155 ORTHO05D012487 5.0e-108 394.4 198 100.0
C02p25090 Brassica napus HOM05D003155 ORTHO05D012487 5.7e-19 98.6 58 87.9
BolC2t08589H Brassica oleracea HOM05D003155 ORTHO05D012487 5.7e-19 98.6 58 87.9
BraA02t06587Z Brassica rapa HOM05D003155 ORTHO05D012487 7.5e-19 98.2 51 98.0
BcaB02g07704 Brassica carinata HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BcaC08g44717 Brassica carinata HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BcaNung04653 Brassica carinata HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
A07p22400 Brassica napus HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
A09p48030 Brassica napus HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
C06p22560 Brassica napus HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
C08p30250 Brassica napus HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BolC6t37446H Brassica oleracea HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BolC8t50632H Brassica oleracea HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BraA07t29916Z Brassica rapa HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
BraA09t40256Z Brassica rapa HOM05D003155 ORTHO05D004342 6.3e-18 95.1 54 85.2
Gohir.D11G116300 Gossypium hirsutum HOM05D003155 ORTHO05D004342 7.0e-17 91.7 53 83.0
Actinidia11005 Actinidia chinensis HOM05D003155 ORTHO05D004342 1.2e-16 90.9 53 83.0
Gohir.A11G111100 Gossypium hirsutum HOM05D003155 ORTHO05D004342 1.2e-16 90.9 53 83.0
Gorai.007G124500 Gossypium raimondii HOM05D003155 ORTHO05D004342 1.2e-16 90.9 53 83.0
Sc08g0003390 Simmondsia chinensis HOM05D003155 ORTHO05D004342 1.2e-16 90.9 89 57.3
GSVIVG01028086001 Vitis vinifera HOM05D003155 ORTHO05D004342 1.2e-16 90.9 54 79.6
Atru.chr10.1937 Acer truncatum HOM05D003155 ORTHO05D004342 1.6e-16 90.5 53 81.1
CDE05G1659 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 1.6e-16 90.5 53 83.0
Sed0004341 Sechium edule HOM05D003155 ORTHO05D004342 1.6e-16 90.5 53 81.1
CSS0004103 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 2.0e-16 90.1 53 83.0
CSS0028730 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 2.0e-16 90.1 53 83.0
CDE11G0169 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 2.0e-16 90.1 53 83.0
Nn3g21630 Nelumbo nucifera HOM05D003155 ORTHO05D004342 2.0e-16 90.1 53 81.1
Cfa005833 Carpinus fangiana HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 81.1
CiPaw.07G115200 Carya illinoinensis HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 83.0
Haze_05010 Corylus avellana HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 81.1
ECA246G1648 Erigeron canadensis HOM05D003155 ORTHO05D001887 2.7e-16 89.7 53 81.1
HanXRQChr06g0174841 Helianthus annuus HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 81.1
Prupe.1G528600 Prunus persica HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 81.1
Sp5g07410 Schrenkiella parvula HOM05D003155 ORTHO05D004342 2.7e-16 89.7 54 81.5
TAR362G0957 Trochodendron aralioides HOM05D003155 ORTHO05D004342 2.7e-16 89.7 53 81.1
COL.COLO4_23262 Corchorus olitorius HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
Dinv33099 Davidia involucrata HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 79.2
HanXRQChr17g0540071 Helianthus annuus HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
MBI19_g29997_MAGBIO Magnolia biondii HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
Potri.014G123000 Populus trichocarpa HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
Thecc.01G310300 Theobroma cacao HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
TWI53G1268 Tripterygium wilfordii HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
TWI53G1422 Tripterygium wilfordii HOM05D003155 ORTHO05D004342 3.5e-16 89.4 53 81.1
ClCG01G001560 Citrullus lanatus HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 83.0
ECA248G1812 Erigeron canadensis HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 79.2
Lsat_1_v5_gn_3_29341 Lactuca sativa HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 81.1
SalBow2G2017 Salvia bowleyana HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 81.1
SalBow8G2165 Salvia bowleyana HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 81.1
SGA_v2.0_scaffold1G00231 Striga asiatica HOM05D003155 ORTHO05D004342 4.5e-16 89.0 53 83.0
AT3G55010 Arabidopsis thaliana HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
Thhalv10010436m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
Peaxi162Scf00066g00524 Petunia axillaris HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
Peaxi162Scf00591g00412 Petunia axillaris HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
Solyc04g058090.3 Solanum lycopersicum HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
Sopen04g025920 Solanum pennellii HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
PGSC0003DMG400023032 Solanum tuberosum HOM05D003155 ORTHO05D004342 5.9e-16 88.6 53 81.1
CAN.G630.85 Capsicum annuum HOM05D003155 ORTHO05D004342 7.7e-16 88.2 53 81.1
Cc00_g15210 Coffea canephora HOM05D003155 ORTHO05D004342 7.7e-16 88.2 53 81.1
TWI09G1633 Tripterygium wilfordii HOM05D003155 ORTHO05D004342 7.7e-16 88.2 53 79.2
TAR362G0238 Trochodendron aralioides HOM05D003155 ORTHO05D004342 7.7e-16 88.2 53 79.2
CANSAT25G1273 Cannabis sativa HOM05D003155 ORTHO05D004342 1.0e-15 87.8 53 79.2
Cfa005838 Carpinus fangiana HOM05D003155 ORTHO05D004342 1.0e-15 87.8 53 79.2
DCAR_024227 Daucus carota HOM05D003155 ORTHO05D004342 1.0e-15 87.8 53 79.2
DCAR_027274 Daucus carota HOM05D003155 ORTHO05D004342 1.0e-15 87.8 53 79.2
Duzib138G0641 Durio zibethinus HOM05D003155 ORTHO05D004342 1.0e-15 87.8 53 79.2
Carub.0005s2164 Capsella rubella HOM05D003155 ORTHO05D004342 1.3e-15 87.4 53 79.2
Manes.01G225900 Manihot esculenta HOM05D003155 ORTHO05D004342 1.3e-15 87.4 53 79.2
Manes.05G001800 Manihot esculenta HOM05D003155 ORTHO05D004342 1.3e-15 87.4 53 79.2
SGA_v2.0_scaffold223G42841 Striga asiatica HOM05D003155 ORTHO05D004342 1.3e-15 87.4 53 81.1
THA.LOC104817470 Tarenaya hassleriana HOM05D003155 ORTHO05D004342 1.3e-15 87.4 53 79.2
EL10Ac9g21469 Beta vulgaris HOM05D003155 ORTHO05D004342 1.7e-15 87.0 81 60.5
CARHR165020 Cardamine hirsuta HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 79.2
FvH4_1g23040 Fragaria vesca HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 81.1
FAN19G1072 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 81.1
FAN23G2124 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 81.1
FAN26G2094 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 81.1
FAN28G3015 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 81.1
GSVIVG01011409001 Vitis vinifera HOM05D003155 ORTHO05D004342 1.7e-15 87.0 53 77.4
AUR62010120 Chenopodium quinoa HOM05D003155 ORTHO05D004342 2.2e-15 86.7 89 55.1
AUR62013115 Chenopodium quinoa HOM05D003155 ORTHO05D004342 2.2e-15 86.7 89 55.1
Cc11_g04240 Coffea canephora HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
MELO3C005781.2 Cucumis melo HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
CsaV3_5G001710 Cucumis sativus L. HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
Lj3A1064T100 Lonicera japonica HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 77.4
Nitab4.5_0000317g0060 Nicotiana tabacum HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
Nitab4.5_0002557g0030 Nicotiana tabacum HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
Sabra02G0159100 Salix brachista HOM05D003155 ORTHO05D004342 2.2e-15 86.7 53 79.2
Hma1.2p1_1785F.1_g302280 Hydrangea macrophylla HOM05D003155 ORTHO05D004342 2.9e-15 86.3 53 77.4
MD15G1382400 Malus domestica HOM05D003155 ORTHO05D004342 2.9e-15 86.3 53 77.4
Hund06387 Selenicereus undatus HOM05D003155 ORTHO05D004342 2.9e-15 86.3 53 79.2
Lj6C819T16 Lonicera japonica HOM05D003155 ORTHO05D004342 3.8e-15 85.9 46 82.6
Zm00001eb284260 Zea mays HOM05D003155 ORTHO05D004342 3.8e-15 85.9 79 59.5
AL5G36130 Arabidopsis lyrata HOM05D003155 ORTHO05D004342 5.0e-15 85.5 53 77.4
Dinv10072 Davidia involucrata HOM05D003155 ORTHO05D004342 5.0e-15 85.5 53 75.5
Eucgr.A02767 Eucalyptus grandis HOM05D003155 ORTHO05D004342 5.0e-15 85.5 53 75.5
Oeu008950.2 Olea europaea HOM05D003155 ORTHO05D004342 5.0e-15 85.5 53 77.4
Aqoxy5G00145 Aquilegia oxysepala HOM05D003155 ORTHO05D004342 6.5e-15 85.1 53 77.4
MSTRG.7527 Avicennia marina HOM05D003155 ORTHO05D004342 6.5e-15 85.1 53 77.4
Migut.M01874 Erythranthe guttata HOM05D003155 ORTHO05D004342 8.5e-15 84.7 53 75.5
Oeu040091.1 Olea europaea HOM05D003155 ORTHO05D004342 8.5e-15 84.7 53 75.5
vmacro23398 Vaccinium macrocarpon HOM05D003155 ORTHO05D004342 8.5e-15 84.7 53 77.4
Aa31sc33G80 Aethionema arabicum HOM05D003155 ORTHO05D004342 1.1e-14 84.3 53 77.4
EL10Ac1g01546 Beta vulgaris HOM05D003155 ORTHO05D004342 1.5e-14 84.0 62 67.7
Eucgr.L02454 Eucalyptus grandis HOM05D003155 ORTHO05D004342 1.5e-14 84.0 52 75.0
Os03g0831500 Oryza sativa ssp. japonica HOM05D003155 ORTHO05D004342 1.5e-14 84.0 53 75.5
PSO675G7447 Papaver somniferum HOM05D003155 ORTHO05D004342 1.5e-14 84.0 52 78.8
HPP92_001922 Vanilla planifolia HOM05D003155 ORTHO05D004342 1.5e-14 84.0 52 76.9
Zm00001eb115440 Zea mays HOM05D003155 ORTHO05D004342 1.5e-14 84.0 79 57.0
PSO541G5346 Papaver somniferum HOM05D003155 ORTHO05D004342 1.9e-14 83.6 52 78.8
Potri.002G198600 Populus trichocarpa HOM05D003155 ORTHO05D004342 1.9e-14 83.6 53 75.5
RcHm_v2.0_Chr2g0117751 Rosa chinensis HOM05D003155 ORTHO05D004342 1.9e-14 83.6 53 75.5
Hund00057 Selenicereus undatus HOM05D003155 ORTHO05D004342 1.9e-14 83.6 89 53.9
vmacro12338 Vaccinium macrocarpon HOM05D003155 ORTHO05D004342 2.5e-14 83.2 53 75.5
Cpa.g.sc8.158 Carica papaya HOM05D003155 ORTHO05D004342 4.2e-14 82.4 53 73.6
MD08G1194700 Malus domestica HOM05D003155 ORTHO05D004342 4.2e-14 82.4 53 75.5
CSS0047504 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 5.5e-14 82.0 53 75.5
Lj4g0014336 Lotus japonicus HOM05D003155 ORTHO05D004342 7.2e-14 81.6 53 77.4
Ah.01g001460 Amaranthus hybridus HOM05D003155 ORTHO05D003938 9.4e-14 81.3 79 55.7
ATR0693G061 Amborella trichopoda HOM05D003155 ORTHO05D004342 9.4e-14 81.3 53 73.6
arahy.Tifrunner.gnm1.ann1.DJPQ45 Arachis hypogaea HOM05D003155 ORTHO05D004342 9.4e-14 81.3 53 75.5
arahy.Tifrunner.gnm1.ann1.PM89VL Arachis hypogaea HOM05D003155 ORTHO05D004342 9.4e-14 81.3 53 75.5
Lalb_Chr08g0238231 Lupinus albus HOM05D003155 ORTHO05D004342 9.4e-14 81.3 53 75.5
MD08G1194300 Malus domestica HOM05D003155 ORTHO05D004342 9.4e-14 81.3 53 71.7
Mapoly0003s0273 Marchantia polymorpha HOM05D003155 ORTHO05D004342 1.2e-13 80.9 53 73.6
Medtr8g093860 Medicago truncatula HOM05D003155 ORTHO05D004342 2.7e-13 79.7 53 75.5
SEGI_27039 Sequoiadendron giganteum HOM05D003155 ORTHO05D004342 2.7e-13 79.7 53 71.7
Lsat_1_v5_gn_8_28960 Lactuca sativa HOM05D003155 ORTHO05D004342 3.6e-13 79.3 53 71.7
Pp3c5_3030 Physcomitrium patens HOM05D003155 ORTHO05D004342 3.6e-13 79.3 53 71.7
SMO116G0007 Selaginella moellendorffii HOM05D003155 ORTHO05D004342 3.6e-13 79.3 53 73.6
AagrBONN_evm.TU.Sc2ySwM_368.880 Anthoceros agrestis HOM05D003155 ORTHO05D004342 4.7e-13 79.0 52 71.2
Glyma.05G192900 Glycine max HOM05D003155 ORTHO05D004342 6.1e-13 78.6 53 71.7
Phvul.002G273500 Phaseolus vulgaris HOM05D003155 ORTHO05D004342 6.1e-13 78.6 53 71.7
Pp3c6_25750 Physcomitrium patens HOM05D003155 ORTHO05D004342 6.1e-13 78.6 53 73.6
unitig_37.g12904 Utricularia gibba HOM05D003155 ORTHO05D004342 6.1e-13 78.6 53 71.7
VMungo0251G2281 Vigna mungo HOM05D003155 ORTHO05D004342 6.1e-13 78.6 53 71.7
Ca_14922_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 8.0e-13 78.2 53 71.7
Ca_22781_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 8.0e-13 78.2 53 71.7
RcHm_v2.0_Chr5g0056581 Rosa chinensis HOM05D003155 ORTHO05D004342 8.0e-13 78.2 53 71.7
Lj5g0009987 Lotus japonicus HOM05D003155 ORTHO05D004342 1.0e-12 77.8 53 71.7
PGR119G0649 Punica granatum HOM05D003155 ORTHO05D004342 1.0e-12 77.8 53 71.7
TPR.G37349 Trifolium pratense HOM05D003155 ORTHO05D004342 1.0e-12 77.8 53 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1369 Anthoceros agrestis HOM05D003155 ORTHO05D004342 1.8e-12 77.0 52 69.2
Glyma.08G001000 Glycine max HOM05D003155 ORTHO05D004342 1.8e-12 77.0 53 71.7
Psat7g045040 Pisum sativum HOM05D003155 ORTHO05D004342 2.3e-12 76.6 53 69.8
CiPaw.13G147200 Carya illinoinensis HOM05D003155 ORTHO05D004342 3.0e-12 76.3 68 58.8
CBR_g16871 Chara braunii HOM05D003155 ORTHO05D004342 4.0e-12 75.9 53 67.9
PRCOL_00001570 Prasinoderma coloniale HOM05D003155 ORTHO05D004342 4.0e-12 75.9 90 51.1
TPR.G31811 Trifolium pratense HOM05D003155 ORTHO05D004342 4.0e-12 75.9 91 48.4
PGR066G0004 Punica granatum HOM05D003155 ORTHO05D004342 1.2e-11 74.3 53 67.9
PGR142G1043 Punica granatum HOM05D003155 ORTHO05D004342 1.2e-11 74.3 53 67.9
RcHm_v2.0_Chr7g0218451 Rosa chinensis HOM05D003155 ORTHO05D004342 2.6e-11 73.2 53 67.9
CARHR165030 Cardamine hirsuta HOM05D003155 ORTHO05D004342 4.4e-11 72.4 55 65.5
MD08G1193800 Malus domestica HOM05D003155 ORTHO05D004342 5.7e-11 72.0 58 56.9
MD08G1195100 Malus domestica HOM05D003155 ORTHO05D004342 5.7e-11 72.0 58 56.9
MD05G1254600 Malus domestica HOM05D003155 ORTHO05D004342 7.5e-11 71.6 53 64.2
Cre07.g318750 Chlamydomonas reinhardtii HOM05D003155 ORTHO05D004342 1.3e-10 70.9 52 65.4
TPR.G14992 Trifolium pratense HOM05D003155 ORTHO05D410879 1.3e-10 70.9 53 62.3
Sp5g14230 Schrenkiella parvula HOM05D003155 ORTHO05D004342 2.2e-10 70.1 58 58.6
Thhalv10018710m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 4.9e-10 68.9 58 56.9
Lalb_Chr11g0068521 Lupinus albus HOM05D003155 ORTHO05D004342 4.5e-08 62.4 43 72.1
CAN.G405.2 Capsicum annuum HOM05D003155 ORTHO05D004342 5.9e-08 62.0 47 68.1
MD08G1195000 Malus domestica HOM05D003155 ORTHO05D004342 1.3e-07 60.8 44 63.6
Cfa005835 Carpinus fangiana HOM05D003155 ORTHO05D004342 2.9e-07 59.7 40 75.0
MD08G1194800 Malus domestica HOM05D003155 ORTHO05D004342 5.6e-06 55.5 40 62.5


User provided reference genes

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