Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 5.6e-190 667.5 362 100.0
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 8.4e-186 653.7 362 98.3
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 8.4e-186 653.7 383 94.3
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.5e-185 652.1 362 98.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 5.1e-183 644.4 388 91.8
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.9e-178 628.6 361 95.3
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 2.4e-172 609.0 361 92.5
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 1.0e-170 603.6 361 91.1
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 6.7e-167 590.9 361 89.8
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 3.7e-165 585.1 361 88.4
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 3.4e-163 578.6 361 88.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 4.5e-163 578.2 361 88.1
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.0e-159 567.0 366 86.3
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.2e-138 496.1 366 77.6
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 6.8e-127 458.0 361 71.5
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 5.7e-126 454.9 361 71.2
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 3.7e-125 452.2 364 71.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 5.4e-124 448.4 363 71.1
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 3.5e-123 445.7 312 79.8
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 5.9e-123 444.9 370 70.3
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 5.9e-123 444.9 354 71.2
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 6.6e-122 441.4 304 79.6
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.1e-121 440.7 341 72.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.9e-121 439.9 303 78.2
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.9e-121 439.9 294 81.6
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.3e-121 439.1 289 82.0
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 3.3e-121 439.1 289 82.0
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 4.3e-121 438.7 349 69.3
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 7.3e-121 438.0 291 80.4
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 9.5e-121 437.6 370 68.9
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.6e-120 436.8 289 82.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.6e-120 436.8 366 70.2
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.6e-120 436.8 354 70.1
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.1e-120 436.4 312 77.2
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.1e-120 436.4 313 78.3
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.8e-120 436.0 311 75.2
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.8e-120 436.0 289 81.7
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 6.2e-120 434.9 388 66.0
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.0e-119 434.1 388 65.7
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.8e-119 433.3 311 75.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.8e-119 433.3 291 80.8
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.3e-119 433.0 291 80.4
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 3.1e-119 432.6 289 81.0
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 3.1e-119 432.6 283 81.3
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 5.2e-119 431.8 320 76.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 5.2e-119 431.8 288 77.8
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 5.2e-119 431.8 313 76.0
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 6.8e-119 431.4 265 87.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 6.8e-119 431.4 291 80.4
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.8e-119 431.4 264 86.0
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 6.8e-119 431.4 291 80.4
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 8.9e-119 431.0 311 74.3
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 8.9e-119 431.0 289 78.5
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.2e-118 430.6 278 80.9
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.2e-118 430.6 313 75.4
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.5e-118 430.3 369 67.8
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.5e-118 430.3 311 75.6
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 1.5e-118 430.3 362 68.0
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.5e-118 430.3 307 76.2
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.5e-118 430.3 291 79.4
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.0e-118 429.9 289 82.0
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.0e-118 429.9 337 72.1
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.5e-118 427.9 310 75.5
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.5e-118 427.9 343 69.7
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 7.5e-118 427.9 312 76.3
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.3e-117 427.2 263 85.9
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.3e-117 427.2 317 73.2
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 2.2e-117 426.4 289 79.9
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.2e-117 426.4 338 72.5
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.2e-117 426.4 302 77.5
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 6.4e-117 424.9 289 78.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.4e-116 423.7 344 70.3
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.2e-115 420.6 337 70.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.6e-115 420.2 291 78.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 7.8e-115 417.9 284 81.3
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.3e-114 416.4 316 74.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 2.5e-113 412.9 294 77.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 4.3e-113 412.1 289 78.5
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.6e-112 410.2 319 71.2
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.0e-110 403.3 385 63.1
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 4.4e-110 402.1 330 70.3
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.9e-110 401.0 290 75.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.3e-109 400.6 290 74.5
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 6.4e-109 398.3 292 74.0
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 3.3e-105 386.0 361 61.8
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 4.7e-104 382.1 332 68.7
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 3.4e-102 375.9 257 78.6
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 4.9e-101 372.1 267 75.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.1e-100 370.9 324 65.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.4e-100 370.5 286 70.3
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 7.1e-100 368.2 267 72.7
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 4.6e-99 365.5 283 71.7
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 7.8e-99 364.8 245 79.2
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.0e-98 364.4 352 63.4
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 3.0e-98 362.8 263 74.1
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 6.6e-98 361.7 300 69.7
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 7.3e-97 358.2 397 58.4
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.1e-96 356.7 397 58.2
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.4e-95 354.0 254 76.4
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.1e-95 352.8 225 83.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.7e-93 347.1 258 71.7
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 3.8e-93 345.9 319 63.9
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.3e-88 330.9 332 59.3
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 4.8e-88 328.9 240 73.3
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.4e-87 326.6 196 85.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 2.2e-85 320.1 276 66.3
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 3.9e-82 309.3 291 63.9
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 2.4e-79 300.1 262 62.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.7e-72 276.2 247 64.8
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.6e-70 270.0 276 57.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 7.6e-70 268.5 231 70.6
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 3.8e-69 266.2 245 58.8
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.0e-66 258.1 293 57.0
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 2.5e-65 253.4 231 68.8
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 4.5e-62 242.7 270 55.2
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.5e-61 238.8 286 49.3
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.0e-53 212.6 166 71.1
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.6e-51 207.6 140 84.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.8e-47 194.1 135 79.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.7e-40 169.9 98 87.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.4e-39 167.9 142 69.7
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 6.5e-37 159.1 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 5.2e-34 149.4 93 80.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.7e-33 145.2 158 53.8
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.8e-32 143.7 158 53.2
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.0e-29 132.9 125 62.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.7e-21 107.8 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 9.8e-17 92.0 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 8.3e-16 89.0 60 80.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 5.0e-13 79.7 225 32.0
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.0e-10 70.5 47 76.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.6e-06 56.6 29 100.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.8e-06 55.8 31 90.3


User provided reference genes

Program Settings