Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.6e-232 809.7 614 100.0
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 3.8e-231 805.1 614 99.7
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 5.4e-217 758.1 615 96.3
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 5.4e-217 758.1 615 96.3
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 1.8e-196 689.9 615 91.1
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 2.4e-188 662.9 618 88.5
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 6.4e-186 654.8 618 86.9
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 7.8e-184 647.9 614 87.0
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 3.1e-180 636.0 614 86.0
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 3.2e-177 625.9 619 84.5
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 3.1e-156 556.2 403 71.7
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 2.7e-120 436.8 359 67.1
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 7.0e-116 422.2 416 55.3
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 2.7e-91 340.5 385 49.6
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 5.4e-84 316.2 392 44.9
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.3e-82 310.8 380 45.3
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 1.9e-81 307.8 365 45.5
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.6e-80 303.5 326 48.5
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 6.8e-79 299.3 360 45.8
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 6.8e-79 299.3 393 44.0
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 2.6e-78 297.4 323 48.0
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.4e-78 297.0 373 43.7
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 3.4e-78 297.0 323 47.7
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 4.4e-78 296.6 323 48.6
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 7.6e-78 295.8 402 43.3
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 1.9e-76 291.2 322 47.5
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 3.2e-76 290.4 323 48.9
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.2e-75 288.5 356 45.5
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 6.6e-74 282.7 383 42.8
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 1.1e-73 282.0 335 46.3
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.1e-73 282.0 362 43.4
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.3e-73 280.4 392 41.8
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 5.6e-73 279.6 405 42.2
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 1.3e-72 278.5 393 41.2
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.6e-72 278.1 392 41.6
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 1.6e-72 278.1 397 41.6
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.6e-72 276.9 392 41.3
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 4.8e-72 276.6 375 41.9
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 6.2e-72 276.2 314 47.1
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 6.2e-72 276.2 340 45.0
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 8.1e-72 275.8 397 40.8
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.1e-71 275.4 322 46.3
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 3.1e-71 273.9 395 41.5
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 1.5e-70 271.6 361 44.3
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 2.6e-70 270.8 407 39.1
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 3.4e-70 270.4 398 42.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.3e-69 268.5 327 44.0
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 4.2e-68 263.5 331 41.7
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 1.2e-67 261.9 374 40.6
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.6e-67 261.5 374 40.6
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.6e-67 261.5 318 44.3
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.0e-67 259.6 374 40.4
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 7.9e-67 259.2 395 39.2
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.9e-67 259.2 326 43.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 2.3e-66 257.7 322 41.9
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 3.9e-66 256.9 329 42.9
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 4.8e-64 250.0 384 41.1
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 2.4e-60 237.7 364 38.5
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 3.5e-59 233.8 304 40.1
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 2.3e-58 231.1 366 38.5
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.3e-57 226.9 336 38.1
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 1.3e-56 225.3 359 37.9
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 1.4e-55 221.9 357 37.3
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 4.5e-54 216.9 346 39.6
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.7e-53 214.9 366 35.5
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 4.2e-52 210.3 361 36.0
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.6e-51 206.8 287 38.7
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 6.0e-51 206.5 323 34.4
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 3.0e-50 204.1 333 35.1
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 1.5e-49 201.8 335 36.7
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 3.3e-49 200.7 285 37.5
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 9.6e-49 199.1 299 40.5
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 4.8e-48 196.8 294 39.1
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 8.2e-48 196.1 276 40.9
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 8.2e-48 196.1 201 50.2
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 1.4e-47 195.3 236 44.5
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.4e-47 195.3 273 41.4
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 3.1e-47 194.1 334 34.7
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.2e-46 192.2 270 41.5
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.6e-46 191.0 184 54.3
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.7e-45 188.3 184 52.2
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.4e-44 185.3 315 39.4
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.2e-44 184.1 339 36.3
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.8e-42 178.3 268 35.4
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 3.0e-42 177.6 233 40.8
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 3.0e-42 177.6 234 40.6
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 5.1e-42 176.8 186 50.0
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 6.7e-42 176.4 238 39.5
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 3.3e-41 174.1 244 37.7
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.5e-38 165.2 193 46.1
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.3e-37 162.2 229 40.6
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 2.9e-37 161.0 325 32.3
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 5.0e-37 160.2 256 39.5
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.4e-36 158.7 252 37.3
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 7.2e-36 156.4 302 37.4
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 2.7e-35 154.5 247 36.8
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 1.1e-31 142.5 284 34.9
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 8.5e-29 132.9 165 44.8
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 2.1e-27 128.3 119 53.8
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 8.5e-21 106.3 157 36.3
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.8e-15 88.6 66 60.6
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 9.8e-09 66.2 211 22.3
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 8.3e-08 63.2 273 21.2
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.1e-07 62.8 273 20.1
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.4e-07 62.4 220 20.5
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 1.4e-07 62.4 261 21.5
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 2.4e-07 61.6 201 27.4
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 5.4e-07 60.5 273 20.5
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 7.0e-07 60.1 190 25.3
Thhalv10024515m.g Eutrema salsugineum HOM05D005973 ORTHO05D007285 4.5e-06 57.4 201 25.9
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 7.7e-06 56.6 232 22.8


User provided reference genes

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