Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-96 356.3 173 100.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.3e-63 245.4 165 77.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.3e-63 245.4 165 77.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.3e-63 245.4 165 77.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.3e-63 245.4 165 77.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 4.3e-63 245.0 165 77.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.6e-62 243.0 165 76.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-62 242.7 165 77.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 4.8e-62 241.5 165 75.8
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 6.2e-62 241.1 165 75.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 6.2e-62 241.1 165 75.8
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.1e-61 240.4 166 74.7
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.4e-61 240.0 166 74.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.4e-61 239.2 169 73.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.4e-61 239.2 166 75.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.8e-60 234.6 165 72.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.2e-58 228.8 165 71.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 6.0e-57 224.6 165 70.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.3e-56 223.4 165 69.7
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.3e-56 222.6 165 70.3
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.9e-56 221.9 165 70.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.9e-56 221.9 165 69.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 69.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 69.1
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.1e-56 221.5 166 70.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 69.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 70.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 70.3
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 5.1e-56 221.5 165 69.1
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 6.7e-56 221.1 165 69.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 6.7e-56 221.1 165 68.5
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.7e-56 220.7 166 71.1
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 8.7e-56 220.7 166 71.1
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.1e-55 220.3 165 69.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.5e-55 219.9 166 68.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-55 219.9 165 68.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-55 219.5 165 68.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-55 219.5 165 68.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.5e-55 219.2 165 70.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.5e-55 219.2 165 69.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.5e-55 219.2 165 68.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.5e-55 219.2 165 69.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.5e-55 219.2 165 69.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.3e-55 218.8 165 70.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.3e-55 218.8 166 69.3
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.3e-55 218.4 164 70.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.3e-55 218.4 166 69.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 4.3e-55 218.4 165 67.9
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.3e-55 218.4 165 67.9
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.3e-55 218.4 165 67.9
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.3e-55 218.4 165 67.9
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 68.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 68.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 69.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 68.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 67.9
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 67.9
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.7e-55 218.0 165 68.5
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.4e-55 217.6 165 67.3
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 7.4e-55 217.6 166 68.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 7.4e-55 217.6 165 68.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 7.4e-55 217.6 165 67.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 9.6e-55 217.2 165 68.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 9.6e-55 217.2 164 68.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 9.6e-55 217.2 165 68.5
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.6e-54 216.5 165 67.9
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.1e-54 216.1 165 67.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.1e-54 216.1 164 68.9
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.1e-54 216.1 186 61.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.1e-54 216.1 165 66.7
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-54 216.1 165 67.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-54 216.1 165 67.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.8e-54 215.7 165 66.7
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.8e-54 215.7 165 66.7
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.8e-54 215.7 165 67.3
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.8e-54 215.7 165 66.7
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.7e-54 215.3 165 67.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 3.7e-54 215.3 165 67.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.7e-54 215.3 165 67.9
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.8e-54 214.9 165 67.3
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.8e-54 214.9 165 67.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.8e-54 214.9 165 66.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.2e-54 214.5 165 66.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.2e-54 214.5 165 67.3
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.2e-54 214.2 165 66.7
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.2e-54 214.2 165 67.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 8.2e-54 214.2 180 62.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.1e-53 213.8 165 67.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.1e-53 213.8 165 67.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-53 213.8 165 66.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.4e-53 213.4 166 66.3
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.4e-53 213.4 165 66.7
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-53 213.4 165 66.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.4e-53 213.4 165 65.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.4e-53 213.4 165 66.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.8e-53 213.0 165 66.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.8e-53 213.0 166 66.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.8e-53 213.0 165 66.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.8e-53 213.0 165 65.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.4e-53 212.6 165 66.7
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.4e-53 212.6 165 66.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.4e-53 212.6 165 66.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.4e-53 212.6 165 66.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.1e-53 212.2 166 66.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 4.1e-53 211.8 166 66.3
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 5.3e-53 211.5 165 63.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 9.0e-53 210.7 164 65.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.0e-52 209.5 165 66.1
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.0e-52 209.5 164 67.1
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.0e-52 209.5 164 67.1
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.6e-52 209.1 173 63.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 7.6e-52 207.6 191 59.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.0e-51 207.2 165 65.5
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.0e-51 207.2 165 64.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.0e-51 207.2 161 66.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.2e-51 206.1 166 64.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.9e-51 205.7 180 61.1
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.8e-51 205.3 203 55.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 5.0e-51 204.9 165 64.8
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.5e-51 204.5 161 63.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.9e-50 203.0 165 63.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 7.1e-50 201.1 165 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 9.3e-50 200.7 166 62.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.9e-48 195.3 116 81.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.9e-48 195.3 148 69.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.7e-46 188.7 165 57.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 3.9e-40 168.7 144 63.2
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.5e-39 166.0 97 81.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.2e-38 162.9 179 53.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 3.7e-38 162.2 93 81.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.8e-38 161.8 144 62.5
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.6e-36 156.0 131 64.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.6e-36 156.0 94 81.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-34 150.6 150 56.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.9e-34 149.8 161 50.3
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.2e-30 136.3 165 49.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 5.9e-28 128.3 117 50.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.2e-27 126.3 113 52.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.2e-24 115.2 117 44.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-20 103.6 154 42.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-11 73.9 163 36.8
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.2e-11 73.2 75 56.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.9e-10 70.1 47 66.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.5e-10 69.7 42 71.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.5e-10 69.7 43 69.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.2e-10 68.2 71 54.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 8.0e-09 64.7 51 62.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-08 64.3 132 30.3
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.0e-07 60.1 80 46.2
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 4.4e-07 58.9 35 74.3
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.3e-06 54.7 74 45.9


User provided reference genes

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