Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p42060 Brassica napus HOM05D002498 ORTHO05D002553 5.3e-190 667.5 342 100.0
BraA01t04275Z Brassica rapa HOM05D002498 ORTHO05D002553 1.1e-187 659.8 346 98.6
AL3G21400 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 5.7e-91 338.6 290 65.5
Sp3g08380 Schrenkiella parvula HOM05D002498 ORTHO05D002553 5.7e-91 338.6 285 68.8
Thhalv10020482m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 2.8e-90 336.3 290 69.3
C05p58010 Brassica napus HOM05D002498 ORTHO05D002553 1.4e-86 323.9 291 65.6
AT3G10070 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 9.4e-86 321.2 290 64.5
BolC5t34457H Brassica oleracea HOM05D002498 ORTHO05D002553 1.6e-85 320.5 291 65.3
Carub.0003s0917 Capsella rubella HOM05D002498 ORTHO05D002553 3.9e-84 315.8 290 63.1
Aa31LG3G2610 Aethionema arabicum HOM05D002498 ORTHO05D002553 6.9e-81 305.1 293 61.4
A05p38980 Brassica napus HOM05D002498 ORTHO05D002553 3.4e-80 302.8 288 62.8
BraA05t22689Z Brassica rapa HOM05D002498 ORTHO05D002553 3.4e-80 302.8 288 62.8
THA.LOC104816386 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 4.4e-67 259.2 287 55.4
BcaC09g48117 Brassica carinata HOM05D002498 ORTHO05D002553 9.1e-57 224.9 201 64.7
Aa31LG7G13880 Aethionema arabicum HOM05D002498 ORTHO05D002553 7.2e-54 215.3 274 52.2
Ciclev10011440m.g Citrus clementina HOM05D002498 ORTHO05D002553 1.0e-44 184.9 298 44.6
GSVIVG01033805001 Vitis vinifera HOM05D002498 ORTHO05D002553 4.1e-41 172.9 293 42.7
TWI53G1940 Tripterygium wilfordii HOM05D002498 ORTHO05D002553 9.2e-41 171.8 345 39.7
Manes.09G056700 Manihot esculenta HOM05D002498 ORTHO05D002553 1.6e-40 171.0 287 42.5
Glyma.13G152882 Glycine max HOM05D002498 ORTHO05D002553 3.5e-40 169.9 285 38.6
Eucgr.K02056 Eucalyptus grandis HOM05D002498 ORTHO05D002553 6.0e-40 169.1 290 41.4
Thecc.05G086100 Theobroma cacao HOM05D002498 ORTHO05D002553 7.8e-40 168.7 291 41.2
Lalb_Chr08g0237861 Lupinus albus HOM05D002498 ORTHO05D002553 1.3e-39 167.9 292 39.0
Cpa.g.sc5.43 Carica papaya HOM05D002333 ORTHO05D002485 8.6e-39 165.2 296 41.9
Potri.006G083500 Populus trichocarpa HOM05D002498 ORTHO05D002553 8.6e-39 165.2 291 41.2
Phvul.007G228800 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 1.1e-38 164.9 286 38.5
Psat6g081520 Pisum sativum HOM05D002498 ORTHO05D002553 1.1e-38 164.9 289 39.8
CANSAT80G2428 Cannabis sativa HOM05D002498 ORTHO05D002553 1.5e-38 164.5 299 40.1
CANSAT80G2666 Cannabis sativa HOM05D002498 ORTHO05D002553 1.5e-38 164.5 301 39.9
PGR142G0490 Punica granatum HOM05D002498 ORTHO05D002553 3.6e-37 159.8 290 41.4
VMungo0720G1109 Vigna mungo HOM05D002498 ORTHO05D002553 4.7e-37 159.5 285 38.6
Glyma.10G070700 Glycine max HOM05D002498 ORTHO05D002553 8.0e-37 158.7 276 38.0
Medtr1g060410 Medicago truncatula HOM05D002498 ORTHO05D002553 1.1e-36 158.3 286 38.8
QL07p039457 Quercus lobata HOM05D002498 ORTHO05D002553 9.8e-35 151.8 293 40.3
Peaxi162Scf01015g00113 Petunia axillaris HOM05D002498 ORTHO05D002553 1.7e-34 151.0 284 39.8
Rhsim03G0077100 Rhododendron simsii HOM05D002498 ORTHO05D002553 2.2e-34 150.6 290 39.0
arahy.Tifrunner.gnm1.ann1.X6IDHH Arachis hypogaea HOM05D002498 ORTHO05D002553 3.7e-34 149.8 287 39.0
arahy.Tifrunner.gnm1.ann1.FR3P05 Arachis hypogaea HOM05D002498 ORTHO05D002553 1.1e-33 148.3 287 39.0
CARHR084570 Cardamine hirsuta HOM05D002498 ORTHO05D002553 1.1e-33 148.3 130 62.3
Ca_22051_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 1.1e-33 148.3 292 35.3
Gohir.A01G138400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.1e-33 148.3 269 39.0
CsaV3_6G040610 Cucumis sativus L. HOM05D002498 ORTHO05D002553 1.4e-33 147.9 287 37.3
Sopen09g004440 Solanum pennellii HOM05D002498 ORTHO05D002553 1.4e-33 147.9 288 38.9
CiPaw.10G008100 Carya illinoinensis HOM05D002498 ORTHO05D002553 3.2e-33 146.7 295 40.7
Duzib093G0103 Durio zibethinus HOM05D002498 ORTHO05D002553 3.2e-33 146.7 271 40.2
Duzib128G0693 Durio zibethinus HOM05D002498 ORTHO05D002553 4.1e-33 146.4 243 41.6
Solyc09g009680.2 Solanum lycopersicum HOM05D002498 ORTHO05D002553 5.4e-33 146.0 287 38.0
Dinv31667 Davidia involucrata HOM05D002498 ORTHO05D002553 9.2e-33 145.2 297 37.7
MD12G1023000 Malus domestica HOM05D002498 ORTHO05D002553 1.6e-32 144.4 328 36.3
MD14G1020000 Malus domestica HOM05D002498 ORTHO05D002553 2.1e-32 144.1 325 36.9
Sc20g0006210 Simmondsia chinensis HOM05D002498 ORTHO05D002553 2.1e-32 144.1 281 37.4
FvH4_6g18380 Fragaria vesca HOM05D002498 ORTHO05D002553 4.6e-32 142.9 309 38.2
Dinv21224 Davidia involucrata HOM05D001906 ORTHO05D002083 6.0e-32 142.5 267 39.0
TAR623G1132 Trochodendron aralioides HOM05D002498 ORTHO05D002553 6.0e-32 142.5 283 39.2
Actinidia05442 Actinidia chinensis HOM05D002498 ORTHO05D002553 7.8e-32 142.1 291 35.4
TPR.G35430 Trifolium pratense HOM05D002498 ORTHO05D002553 7.8e-32 142.1 332 34.3
CSS0029798 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 2.3e-31 140.6 304 36.8
Cfa016584 Carpinus fangiana HOM05D002498 ORTHO05D002553 6.6e-31 139.0 289 37.7
Nitab4.5_0000794g0020 Nicotiana tabacum HOM05D002498 ORTHO05D002553 8.6e-31 138.7 289 39.4
Gorai.002G158700 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.1e-30 138.3 267 39.3
RcHm_v2.0_Chr3g0472861 Rosa chinensis HOM05D002498 ORTHO05D002553 1.9e-30 137.5 310 37.1
Nn2g14104 Nelumbo nucifera HOM05D002498 ORTHO05D002553 4.3e-30 136.3 299 37.1
Atru.chr8.1574 Acer truncatum HOM05D002498 ORTHO05D002553 7.3e-30 135.6 306 36.3
FAN02G2657 Fragaria x ananassa HOM05D002498 ORTHO05D002553 7.3e-30 135.6 311 37.0
Haze_19584 Corylus avellana HOM05D002498 ORTHO05D002553 1.6e-29 134.4 288 37.5
CAN.G397.34 Capsicum annuum HOM05D002498 ORTHO05D002553 6.2e-29 132.5 287 35.5
FAN14G2103 Fragaria x ananassa HOM05D002498 ORTHO05D002553 8.1e-29 132.1 293 37.9
MSTRG.5828 Avicennia marina HOM05D002498 ORTHO05D002553 1.1e-28 131.7 291 34.0
PGSC0003DMG400008963 Solanum tuberosum HOM05D002498 ORTHO05D002553 1.4e-28 131.3 290 37.9
Nitab4.5_0002400g0020 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.8e-28 131.0 313 35.1
SGA_v2.0_scaffold13G06755 Striga asiatica HOM05D002498 ORTHO05D002553 6.8e-28 129.0 285 34.4
MELO3C000238.2 Cucumis melo HOM05D002498 ORTHO05D002553 1.2e-27 128.3 267 36.0
Oeu014905.2 Olea europaea HOM05D002498 ORTHO05D002553 1.5e-27 127.9 314 34.1
Sabra06G0063100 Salix brachista HOM05D002498 ORTHO05D002553 2.6e-27 127.1 282 36.9
Hund19953 Selenicereus undatus HOM05D002498 ORTHO05D002553 3.4e-27 126.7 311 33.1
ClCG04G009960 Citrullus lanatus HOM05D002498 ORTHO05D002553 4.4e-27 126.3 322 32.9
Gohir.D01G128066 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.2e-26 124.0 252 38.5
FAN05G3504 Fragaria x ananassa HOM05D002498 ORTHO05D002553 2.9e-26 123.6 295 36.6
Lj2A134T56 Lonicera japonica HOM05D002498 ORTHO05D002553 2.9e-26 123.6 305 34.8
arahy.Tifrunner.gnm1.ann1.PV9J4A Arachis hypogaea HOM05D002498 ORTHO05D002553 9.2e-25 118.6 298 35.6
arahy.Tifrunner.gnm1.ann1.UN6F3P Arachis hypogaea HOM05D002498 ORTHO05D002553 9.2e-25 118.6 298 35.6
FAN09G2440 Fragaria x ananassa HOM05D002498 ORTHO05D002553 9.2e-25 118.6 335 34.0
FAN05G0009 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.6e-24 117.9 295 35.3
Sed0015742 Sechium edule HOM05D002498 ORTHO05D002553 1.6e-24 117.9 287 35.2
Sed0013523 Sechium edule HOM05D002498 ORTHO05D002553 4.6e-24 116.3 306 33.3
COL.COLO4_29776 Corchorus olitorius HOM05D002333 ORTHO05D002485 6.0e-24 115.9 203 38.9
HanXRQChr13g0401921 Helianthus annuus HOM05D002498 ORTHO05D002553 3.0e-23 113.6 297 31.6
SalBow3G2137 Salvia bowleyana HOM05D002498 ORTHO05D002553 3.0e-23 113.6 251 35.1
Gohir.D01G128132 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.9e-23 113.2 271 35.8
Lj5g0026257 Lotus japonicus HOM05D002498 ORTHO05D002553 1.5e-22 111.3 290 31.7
DCAR_009154 Daucus carota HOM05D002333 ORTHO05D002485 8.1e-21 105.5 298 32.6
AUR62033516 Chenopodium quinoa HOM05D002498 ORTHO05D002553 1.1e-20 105.1 273 33.3
PSO384G1407 Papaver somniferum HOM05D002498 ORTHO05D002553 1.4e-20 104.8 347 31.4
Cc06_g05580 Coffea canephora HOM05D002498 ORTHO05D002553 1.8e-20 104.4 294 33.3
Aqoxy2G01262 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 4.0e-20 103.2 291 32.6
Ah.08g210740 Amaranthus hybridus HOM05D002498 ORTHO05D002553 2.6e-19 100.5 284 32.4
PSO339G1275 Papaver somniferum HOM05D002498 ORTHO05D002553 2.6e-19 100.5 304 30.6
BolC1t05422H Brassica oleracea HOM05D002498 ORTHO05D002553 3.5e-16 90.1 84 61.9
MELO3C024537.2 Cucumis melo HOM05D002498 ORTHO05D002553 1.7e-15 87.8 174 38.5
Os01g0858500 Oryza sativa ssp. japonica HOM05D002498 ORTHO05D002553 3.9e-15 86.7 175 38.3
ECA233G3368 Erigeron canadensis HOM05D002498 ORTHO05D002553 8.7e-15 85.5 294 30.3
ATR0820G218 Amborella trichopoda HOM05D002498 ORTHO05D002553 2.5e-14 84.0 319 31.0
unitig_578.g15756 Utricularia gibba HOM05D002498 ORTHO05D002553 9.6e-14 82.0 124 37.9
SEGI_35401 Sequoiadendron giganteum HOM05D002498 ORTHO05D002553 4.7e-13 79.7 310 31.6
MELO3C010016.2 Cucumis melo HOM05D002498 ORTHO05D002553 1.8e-12 77.8 102 45.1
CDE04G3259 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 2.4e-12 77.4 222 35.1
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 2.6e-11 73.9 314 30.6
Mapoly0047s0024 Marchantia polymorpha HOM05D002498 ORTHO05D002553 5.8e-11 72.8 144 34.7
Zm00001eb147320 Zea mays HOM05D002498 ORTHO05D002553 1.3e-10 71.6 271 31.4
Ah.15g091000 Amaranthus hybridus HOM05D000531 ORTHO05D000877 8.4e-10 68.9 292 26.4
Lsat_1_v5_gn_6_24321 Lactuca sativa HOM05D002498 ORTHO05D001826 1.4e-09 68.2 191 34.0
SMO140G0017 Selaginella moellendorffii HOM05D002498 ORTHO05D002553 2.4e-09 67.4 127 34.6
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 9.3e-09 65.5 187 31.6
ATR0559G035 Amborella trichopoda HOM05D002498 ORTHO05D002553 1.2e-08 65.1 154 31.8
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 3.5e-08 63.5 166 32.5
Psat4g182480 Pisum sativum HOM05D002498 ORTHO05D002553 4.6e-08 63.2 127 32.3
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 6.0e-08 62.8 181 30.9
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 7.8e-08 62.4 184 29.9
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 6.6e-07 59.3 269 28.6
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 6.6e-07 59.3 156 30.1
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 6.6e-07 59.3 161 30.4
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 8.7e-07 58.9 160 30.6
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 1.5e-06 58.2 141 30.5
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.5e-06 58.2 310 25.2
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.9e-06 57.8 315 27.3
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 1.9e-06 57.8 160 31.9
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 2.5e-06 57.4 257 27.2
EL10Ac5g11677 Beta vulgaris HOM05D002498 ORTHO05D002553 3.3e-06 57.0 274 28.5
CBR_g27956 Chara braunii HOM05D002498 ORTHO05D002553 4.3e-06 56.6 109 33.0
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 5.6e-06 56.2 136 29.4
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 5.6e-06 56.2 148 31.8
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 7.3e-06 55.8 305 27.5
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 7.3e-06 55.8 331 25.1
Oeu026825.1 Olea europaea HOM05D002498 ORTHO05D002553 7.3e-06 55.8 88 43.2


User provided reference genes

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