Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.3e-100 369.8 196 100.0
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.3e-100 369.8 196 100.0
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 2.9e-84 315.5 196 87.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 2.9e-84 315.5 201 89.6
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.8e-84 315.1 201 89.6
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.8e-84 315.1 201 89.6
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.5e-83 313.2 201 89.1
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 4.7e-82 308.1 204 85.3
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.8e-81 306.2 201 88.1
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.8e-81 306.2 201 87.6
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-81 305.4 196 87.8
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 4.0e-81 305.1 196 87.2
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 4.0e-81 305.1 196 87.2
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 5.8e-80 301.2 196 84.7
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 9.8e-80 300.4 201 87.6
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.6e-77 293.1 203 82.3
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 7.3e-75 284.3 202 81.2
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.6e-74 283.1 198 82.3
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.1e-74 282.7 198 82.3
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 3.6e-74 282.0 198 82.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 2.6e-72 275.8 197 81.7
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.7e-69 265.8 196 78.1
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.0e-68 262.3 203 77.3
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.0e-68 262.3 204 76.0
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 2.5e-67 259.2 192 77.1
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.6e-66 255.4 202 74.8
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.2e-64 250.4 203 75.4
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.1e-62 243.8 198 72.7
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 4.1e-62 241.9 197 72.6
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.0e-60 237.3 210 69.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.5e-59 233.4 209 67.5
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 2.5e-59 232.6 207 66.7
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.5e-59 232.6 216 64.8
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 4.3e-59 231.9 198 68.2
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 4.3e-59 231.9 210 65.2
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.3e-59 231.9 208 66.3
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 5.6e-59 231.5 203 69.0
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 5.6e-59 231.5 197 70.6
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.3e-59 231.1 211 66.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 9.5e-59 230.7 207 67.1
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.5e-59 230.7 203 69.0
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.2e-58 230.3 214 64.5
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.2e-58 230.3 208 66.8
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.6e-58 229.9 192 67.2
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.1e-58 229.6 196 68.4
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.8e-58 229.2 200 67.5
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.8e-58 229.2 203 67.0
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.8e-58 229.2 196 67.9
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.8e-58 229.2 196 67.9
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 3.6e-58 228.8 214 65.4
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 3.6e-58 228.8 198 66.7
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.7e-58 228.4 198 67.2
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 4.7e-58 228.4 198 67.7
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 6.2e-58 228.0 197 68.5
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 6.2e-58 228.0 196 68.4
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.2e-58 228.0 203 68.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.1e-57 227.3 203 67.0
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.1e-57 227.3 203 67.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.4e-57 226.9 214 62.6
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.4e-57 226.9 203 67.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.8e-57 226.5 201 68.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.8e-57 226.5 207 68.1
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.8e-57 226.5 198 68.7
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.8e-57 226.5 189 66.7
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.8e-57 226.5 204 66.2
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.8e-57 226.5 208 65.9
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 3.1e-57 225.7 194 67.5
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 4.0e-57 225.3 214 63.6
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.0e-57 225.3 198 66.7
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.2e-57 224.9 200 68.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.2e-57 224.9 200 68.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.2e-57 224.9 200 68.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 5.2e-57 224.9 198 66.2
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 6.8e-57 224.6 215 63.3
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 8.9e-57 224.2 197 68.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.2e-56 223.8 198 69.2
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 1.2e-56 223.8 196 65.8
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.5e-56 223.4 208 66.3
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.5e-56 223.4 214 64.5
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-56 223.0 203 67.0
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 2.0e-56 223.0 168 74.4
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 2.0e-56 223.0 196 67.9
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.4e-56 222.2 200 65.5
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 5.8e-56 221.5 221 61.1
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 7.6e-56 221.1 208 64.4
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 7.6e-56 221.1 217 61.8
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.3e-55 220.3 214 63.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 1.7e-55 219.9 218 61.9
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 1.7e-55 219.9 217 62.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.7e-55 219.9 204 65.2
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.2e-55 219.5 214 63.6
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 2.9e-55 219.2 207 66.2
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.8e-55 218.8 214 62.6
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 4.9e-55 218.4 218 61.5
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 4.9e-55 218.4 199 64.8
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.9e-55 218.4 137 81.8
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 6.4e-55 218.0 211 64.0
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.4e-55 218.0 211 63.5
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 6.4e-55 218.0 208 64.9
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 8.4e-55 217.6 214 61.2
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 8.4e-55 217.6 199 66.3
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.1e-54 217.2 218 61.0
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.4e-54 216.9 213 62.4
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 7.1e-54 214.5 210 61.4
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 9.2e-54 214.2 197 66.0
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 1.2e-53 213.8 198 63.1
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 1.2e-53 213.8 194 64.9
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.2e-53 213.8 210 61.4
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 1.2e-53 213.8 209 63.6
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.2e-53 213.8 186 65.6
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 3.5e-53 212.2 148 77.7
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.6e-53 211.8 104 98.1
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 4.6e-53 211.8 207 65.2
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.0e-52 210.7 198 63.6
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.3e-52 209.5 104 97.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.9e-52 208.8 104 96.2
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 5.1e-52 208.4 186 66.7
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 6.6e-52 208.0 181 65.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 8.7e-52 207.6 115 89.6
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 104 97.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.9e-51 206.5 104 95.2
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.9e-51 206.5 203 61.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.9e-51 206.5 108 91.7
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.3e-51 205.7 208 62.0
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 7.3e-51 204.5 206 61.7
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.6e-50 203.4 131 74.8
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.1e-50 203.0 198 63.1
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.1e-50 203.0 209 61.7
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 8.1e-50 201.1 198 59.6
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 8.1e-50 201.1 186 61.8
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 8.1e-50 201.1 162 66.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.8e-49 199.9 196 63.8
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 5.3e-49 198.4 106 92.5
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 5.8e-48 194.9 196 60.7
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-46 190.3 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.4e-46 189.5 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.3e-43 179.1 104 80.8
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.1e-42 176.4 146 64.4
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.1e-42 176.4 130 66.2
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 5.3e-41 171.8 215 53.5
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.2e-39 166.4 153 58.2
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.2e-38 162.5 195 50.8
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.7e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 2.4e-33 146.4 194 47.4
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 3.4e-32 142.5 102 63.7
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 5.8e-32 141.7 154 55.2
BolC1t05144H Brassica oleracea HOM05D004814 ORTHO05D005778 4.2e-30 135.6 106 84.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.5e-30 135.2 99 63.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.1e-19 100.9 135 42.2
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 4.8e-10 68.9 196 35.7


User provided reference genes

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