Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p31320 Brassica napus HOM05D002338 ORTHO05D006706 6.1e-31 136.7 64 100.0
A03p56520 Brassica napus HOM05D002338 ORTHO05D006706 6.1e-31 136.7 64 100.0
A06p16660 Brassica napus HOM05D002338 ORTHO05D006706 6.1e-31 136.7 64 100.0
AT2G27450 Arabidopsis thaliana HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
arahy.Tifrunner.gnm1.ann1.EN3ZRJ Arachis hypogaea HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
Carub.0004s0807 Capsella rubella HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
CARHR120040 Cardamine hirsuta HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
MELO3C004683.2 Cucumis melo HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
CsaV3_1G015010 Cucumis sativus L. HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
DCAR_010340 Daucus carota HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
Migut.N02484 Erythranthe guttata HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
PSO339G0254 Papaver somniferum HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
PSO801G0423 Papaver somniferum HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
QL01p012128 Quercus lobata HOM05D002338 ORTHO05D006706 1.0e-09 66.2 40 77.5
AL4G21410 Arabidopsis lyrata HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
A04p20960 Brassica napus HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
C04p56750 Brassica napus HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
BolC4t27207H Brassica oleracea HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
BraA04t17665Z Brassica rapa HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
ClCG01G012180 Citrullus lanatus HOM05D002338 ORTHO05D006706 1.3e-09 65.9 49 69.4
Thhalv10017003m.g Eutrema salsugineum HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
FAN11G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 1.3e-09 65.9 72 50.0
Sp4g10240 Schrenkiella parvula HOM05D002338 ORTHO05D006706 1.3e-09 65.9 40 75.0
arahy.Tifrunner.gnm1.ann1.MKCD0D Arachis hypogaea HOM05D002338 ORTHO05D006706 1.7e-09 65.5 42 71.4
ATR0820G136 Amborella trichopoda HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
CiPaw.14G099400 Carya illinoinensis HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Duzib150G1080 Durio zibethinus HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Duzib170G1110 Durio zibethinus HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
ECA248G0812 Erigeron canadensis HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Gohir.D09G095800 Gossypium hirsutum HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Gorai.006G112500 Gossypium raimondii HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
HanXRQChr01g0024511 Helianthus annuus HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Nn2g14191 Nelumbo nucifera HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
TAR633G2567 Trochodendron aralioides HOM05D002338 ORTHO05D006706 2.3e-09 65.1 40 75.0
Hund18762 Selenicereus undatus HOM05D002338 ORTHO05D006706 3.0e-09 64.7 39 76.9
Aqoxy2G01110 Aquilegia oxysepala HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
Ciclev10028933m.g Citrus clementina HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
Lsat_1_v5_gn_1_59241 Lactuca sativa HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 72.5
Peaxi162Scf00040g00113 Petunia axillaris HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
Sed0026919 Sechium edule HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
THA.LOC104800525 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
THA.LOC104826428 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 3.9e-09 64.3 40 75.0
Actinidia35467 Actinidia chinensis HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
Actinidia37079 Actinidia chinensis HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
CSS0045463 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
CAN.G1524.8 Capsicum annuum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Gohir.A09G096100 Gossypium hirsutum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Nitab4.5_0000755g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Nitab4.5_0006738g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Potri.004G201400 Populus trichocarpa HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
Rhsim01G0204800 Rhododendron simsii HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
Sabra04G0136100 Salix brachista HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
SMO331G0008 Selaginella moellendorffii HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Solyc11g068540.2 Solanum lycopersicum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
Sopen11g027260 Solanum pennellii HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
PGSC0003DMG400026336 Solanum tuberosum HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 72.5
TWI79G1300 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
vmacro14352 Vaccinium macrocarpon HOM05D002338 ORTHO05D006706 5.0e-09 63.9 40 75.0
Atru.chr3.3215 Acer truncatum HOM05D002338 ORTHO05D006706 6.6e-09 63.5 42 69.0
Aa31LG5G8780 Aethionema arabicum HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
MSTRG.17703 Avicennia marina HOM05D002338 ORTHO05D006706 6.6e-09 63.5 39 74.4
FvH4_3g25110 Fragaria vesca HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
FAN21G3331 Fragaria x ananassa HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
Hma1.2p1_0587F.1_g184230 Hydrangea macrophylla HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
Lalb_Chr24g0393531 Lupinus albus HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
MD03G1147500 Malus domestica HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
Manes.04G002800 Manihot esculenta HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
Prupe.6G132000 Prunus persica HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
RcHm_v2.0_Chr5g0045651 Rosa chinensis HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
RcHm_v2.0_Chr5g0046351 Rosa chinensis HOM05D002338 ORTHO05D006706 6.6e-09 63.5 40 75.0
SalBow3G4661 Salvia bowleyana HOM05D002338 ORTHO05D006706 6.6e-09 63.5 39 74.4
Thecc.09G281400 Theobroma cacao HOM05D002338 ORTHO05D006706 6.6e-09 63.5 39 74.4
Ah.08g215660 Amaranthus hybridus HOM05D002338 ORTHO05D006706 8.6e-09 63.2 39 71.8
Sc21g0007050 Simmondsia chinensis HOM05D002338 ORTHO05D006706 8.6e-09 63.2 39 74.4
EL10Ac7g15831 Beta vulgaris HOM05D002338 ORTHO05D006706 1.1e-08 62.8 39 74.4
Cpa.g.sc195.1 Carica papaya HOM05D002338 ORTHO05D006706 1.1e-08 62.8 40 72.5
AUR62009748 Chenopodium quinoa HOM05D002338 ORTHO05D006706 1.1e-08 62.8 39 74.4
AUR62036197 Chenopodium quinoa HOM05D002338 ORTHO05D006706 1.1e-08 62.8 39 74.4
Eucgr.J00500 Eucalyptus grandis HOM05D002338 ORTHO05D006706 1.1e-08 62.8 40 72.5
Oeu002370.1 Olea europaea HOM05D002338 ORTHO05D006706 1.1e-08 62.8 39 74.4
Oeu035434.1 Olea europaea HOM05D002338 ORTHO05D006706 1.1e-08 62.8 49 65.3
PGR119G2253 Punica granatum HOM05D002338 ORTHO05D006706 1.1e-08 62.8 40 72.5
SGA_v2.0_scaffold295G47518 Striga asiatica HOM05D002338 ORTHO05D006706 1.1e-08 62.8 39 74.4
MSTRG.12373 Avicennia marina HOM05D002338 ORTHO05D006706 1.5e-08 62.4 39 74.4
CiPaw.13G135000 Carya illinoinensis HOM05D002338 ORTHO05D006706 1.9e-08 62.0 40 72.5
Lj3g0018005 Lotus japonicus HOM05D002338 ORTHO05D006706 1.9e-08 62.0 40 70.0
MD11G1166200 Malus domestica HOM05D002338 ORTHO05D006706 2.5e-08 61.6 54 59.3
GSVIVG01036111001 Vitis vinifera HOM05D002338 ORTHO05D006706 2.5e-08 61.6 40 72.5
Cc01_g08990 Coffea canephora HOM05D002338 ORTHO05D006706 3.3e-08 61.2 40 70.0
Lj2A965T21 Lonicera japonica HOM05D002338 ORTHO05D006706 3.3e-08 61.2 40 70.0
Medtr2g086600 Medicago truncatula HOM05D002338 ORTHO05D006706 3.3e-08 61.2 40 70.0
Psat1g178360 Pisum sativum HOM05D002338 ORTHO05D006706 3.3e-08 61.2 40 70.0
Psat5g258120 Pisum sativum HOM05D002338 ORTHO05D006706 3.3e-08 61.2 40 70.0
SHI12384 Sapria himalayana HOM05D002338 ORTHO05D006706 4.3e-08 60.8 40 70.0
Dinv22835 Davidia involucrata HOM05D002338 ORTHO05D006706 5.6e-08 60.5 40 70.0
Glyma.08G074700 Glycine max HOM05D000446 ORTHO05D006706 5.6e-08 60.5 40 70.0
AagrBONN_evm.TU.Sc2ySwM_362.1450 Anthoceros agrestis HOM05D002338 ORTHO05D006706 7.3e-08 60.1 40 67.5
unitig_0.g555 Utricularia gibba HOM05D002338 ORTHO05D006706 7.3e-08 60.1 39 71.8
CANSAT54G2275 Cannabis sativa HOM05D002338 ORTHO05D006706 9.5e-08 59.7 40 70.0
Ca_01654_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006706 9.5e-08 59.7 40 67.5
TPR.G4472 Trifolium pratense HOM05D002338 ORTHO05D006706 1.2e-07 59.3 40 67.5
Os02g0533900 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006706 1.6e-07 58.9 39 69.2
Pp3c18_8260 Physcomitrium patens HOM05D002338 ORTHO05D006706 1.6e-07 58.9 39 69.2
Cfa010006 Carpinus fangiana HOM05D002338 ORTHO05D006706 2.1e-07 58.5 40 70.0
CDE08G1107 Ceratophyllum demersum HOM05D002338 ORTHO05D006706 2.1e-07 58.5 40 70.0
Haze_23365 Corylus avellana HOM05D002338 ORTHO05D006706 2.1e-07 58.5 40 70.0
Glyma.12G185700 Glycine max HOM05D002338 ORTHO05D006706 2.1e-07 58.5 40 67.5
Glyma.13G315800 Glycine max HOM05D002338 ORTHO05D006706 2.1e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.EJ6Q9X Arachis hypogaea HOM05D002338 ORTHO05D006706 2.8e-07 58.2 42 66.7
VMungo1080G1495 Vigna mungo HOM05D002338 ORTHO05D006706 3.6e-07 57.8 40 65.0
CSS0028747 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 4.7e-07 57.4 40 67.5
Mapoly0103s0045 Marchantia polymorpha HOM05D002338 ORTHO05D006706 4.7e-07 57.4 40 65.0
Phvul.005G123100 Phaseolus vulgaris HOM05D002338 ORTHO05D006706 4.7e-07 57.4 40 65.0
TWI75G0919 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 4.7e-07 57.4 40 70.0
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 6.2e-07 57.0 39 69.2
PRCOL_00003112 Prasinoderma coloniale HOM05D002338 ORTHO05D006706 6.2e-07 57.0 39 69.2
CBR_g2849 Chara braunii HOM05D002338 ORTHO05D000013 1.1e-06 56.2 39 66.7
Cre12.g535750 Chlamydomonas reinhardtii HOM05D002338 ORTHO05D006706 1.1e-06 56.2 40 62.5
Potri.009G162600 Populus trichocarpa HOM05D002338 ORTHO05D006706 1.4e-06 55.8 40 67.5


User provided reference genes

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