Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1864.7 943 100.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1819.7 958 97.1
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1808.5 943 97.0
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1801.9 947 96.7
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1716.8 951 92.1
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1483.4 953 79.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1479.5 950 78.7
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1477.6 949 78.6
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1469.9 950 78.3
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1465.7 953 77.9
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1460.7 953 77.9
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1452.6 946 77.7
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1448.3 949 77.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1418.3 930 77.3
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1406.0 951 76.0
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1291.2 958 69.4
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1287.3 921 72.1
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1219.1 896 68.1
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1209.1 965 64.1
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1192.9 886 67.6
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1186.8 787 76.6
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 893 66.0
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1168.7 877 67.4
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1167.5 894 65.9
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1167.5 886 66.1
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1162.9 957 63.0
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1162.9 957 62.7
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1161.7 893 65.4
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1161.4 893 66.4
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1161.0 888 66.3
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1160.6 894 65.4
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1160.2 900 66.0
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1158.7 877 66.8
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1158.3 874 67.4
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1157.9 949 63.0
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1156.4 900 65.4
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1155.2 886 65.6
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1154.8 885 65.0
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1154.4 922 65.1
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1154.0 957 62.2
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1150.2 900 64.7
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1149.4 897 65.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1147.1 888 64.9
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1145.2 886 65.1
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1145.2 943 61.9
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1145.2 890 64.9
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1145.2 882 65.0
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1145.2 956 62.1
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1144.8 888 64.9
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1142.9 886 65.1
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1142.5 886 65.2
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1142.1 917 64.0
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1140.6 883 65.2
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1140.6 958 61.5
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1139.8 887 64.8
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1136.7 966 61.5
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1133.6 967 61.5
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1133.6 890 64.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1133.2 958 61.3
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 966 61.3
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 969 61.3
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1130.5 888 64.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1127.9 909 63.5
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1127.1 955 60.8
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1125.9 887 64.1
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1124.8 888 64.2
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1124.8 917 63.2
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1122.1 993 59.9
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1118.6 877 64.4
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1115.5 893 63.6
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1112.8 860 65.5
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1112.1 910 63.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1104.4 885 63.7
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1102.4 883 63.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1099.7 872 64.1
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1093.2 900 62.9
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 6.5e-312 1073.9 892 61.9
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 1.3e-311 1072.8 909 61.6
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 6.4e-310 1067.4 924 61.1
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.4e-309 1065.4 886 61.5
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 7.0e-309 1063.9 809 66.5
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.5e-308 1061.6 917 60.5
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 6.0e-308 1060.8 897 61.1
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 2.3e-307 1058.9 899 62.4
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 4.3e-306 1054.7 918 59.2
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 6.2e-305 1050.8 812 65.8
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 1.8e-304 1049.3 860 62.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 1.2e-303 1046.6 882 60.1
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 9.9e-303 1043.5 837 63.0
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.2e-300 1036.6 889 61.6
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 1.6e-297 1026.2 877 59.0
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 3.3e-290 1001.9 925 56.9
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.6e-289 999.6 882 60.1
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 7.1e-285 984.2 524 94.5
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.8e-275 953.0 879 56.9
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 1.2e-263 913.7 864 57.5
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.0e-263 912.9 881 52.1
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 2.2e-257 892.9 552 80.6
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 8.5e-254 880.9 891 50.8
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 3.8e-238 828.9 793 56.0
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 5.7e-218 761.9 596 64.3
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.2e-215 754.2 675 59.4
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.1e-208 729.6 642 58.9
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 8.6e-206 721.5 586 62.8
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 2.7e-199 699.9 591 61.8
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.7e-196 689.1 910 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.1e-181 641.3 621 53.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 3.9e-174 616.3 725 46.2
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.1e-172 610.5 514 62.5
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 1.7e-166 590.9 904 41.3
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 3.3e-165 586.6 442 64.3
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 5.4e-160 569.3 296 98.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 9.3e-160 568.5 406 67.7
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.1e-147 528.5 394 67.3
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 4.5e-114 416.8 306 69.3
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.3e-100 372.1 265 69.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 2.5e-88 331.3 303 57.8
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.9e-76 291.2 337 49.9
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.6e-71 275.4 238 55.0
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 6.2e-71 273.5 216 65.3
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 3.1e-62 244.6 172 68.6
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 2.2e-60 238.4 253 50.2
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.5e-45 189.1 218 46.3
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 7.4e-40 170.2 199 51.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.1e-34 152.1 149 57.7
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 5.7e-32 144.1 95 73.7
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-24 117.5 268 32.5
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 3.6e-18 98.2 137 46.0
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.5e-16 92.8 58 79.3
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.1e-14 85.1 82 47.6
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 2.0e-08 65.9 124 38.7
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 7.4e-08 63.9 162 28.4
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.3e-07 63.2 69 53.6
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.2e-07 60.5 37 78.4
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 9.1e-06 57.0 31 83.9


User provided reference genes

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