Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 8.3e-135 483.8 260 100.0
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 2.3e-100 369.4 260 77.7
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 9.6e-99 364.0 260 77.7
A09p43070 Brassica napus HOM05D008309 ORTHO05D010308 3.2e-70 269.2 124 100.0
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 5.7e-67 258.5 293 47.8
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 5.0e-63 245.4 324 42.9
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 1.1e-62 244.2 324 42.9
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 1.4e-62 243.8 249 52.6
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 4.2e-62 242.3 317 42.6
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 6.1e-61 238.4 325 43.4
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 1.4e-60 237.3 329 41.9
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 3.7e-58 229.2 329 41.3
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-57 227.6 329 41.3
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 4.5e-56 222.2 287 44.3
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-54 217.6 137 98.5
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 9.4e-54 214.5 137 81.8
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 3.9e-52 209.1 264 47.3
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 1.7e-50 203.8 132 90.2
A05p38920 Brassica napus HOM05D008309 ORTHO05D010308 2.9e-47 193.0 107 88.8
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 1.9e-46 190.3 282 40.4
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 5.5e-46 188.7 270 40.7
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 1.2e-45 187.6 240 44.2
C02p19790 Brassica napus HOM05D008309 ORTHO05D010308 3.6e-45 186.0 264 42.4
BolC7t46146H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-43 181.0 229 45.9
C01p25750 Brassica napus HOM05D008309 ORTHO05D010308 2.6e-43 179.9 212 46.7
BraA01t02865Z Brassica rapa HOM05D008309 ORTHO05D010308 8.2e-42 174.9 79 100.0
BraA05t22683Z Brassica rapa HOM05D008309 ORTHO05D000062 8.2e-42 174.9 79 100.0
C07p56660 Brassica napus HOM05D008309 ORTHO05D010308 4.1e-41 172.6 229 45.0
C01p31730 Brassica napus HOM05D001350 ORTHO05D001091 4.5e-40 169.1 85 89.4
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 5.9e-40 168.7 297 37.7
BolC1t03108H Brassica oleracea HOM05D001350 ORTHO05D001091 2.2e-39 166.8 84 89.3
C03p39230 Brassica napus HOM05D008309 ORTHO05D010308 2.5e-38 163.3 123 61.0
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 4.2e-38 162.5 297 37.0
C01p31680 Brassica napus HOM05D008309 ORTHO05D000062 8.8e-36 154.8 79 88.6
A09p31570 Brassica napus HOM05D008309 ORTHO05D010308 3.4e-35 152.9 116 62.1
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 9.8e-35 151.4 325 33.8
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 7.7e-32 141.7 107 62.6
BolC1t02525H Brassica oleracea HOM05D008309 ORTHO05D010308 4.2e-30 136.0 191 41.9
BraSC39t46182Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-27 127.9 103 59.2
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 2.6e-27 126.7 248 34.7
BolC4t25321H Brassica oleracea HOM05D008309 ORTHO05D010308 5.7e-27 125.6 80 66.2
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 3.7e-26 122.9 80 65.0
BraA04t17824Z Brassica rapa HOM05D008309 ORTHO05D010308 3.1e-25 119.8 202 38.1
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 5.4e-25 119.0 110 57.3
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 6.6e-23 112.1 247 30.8
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 3.3e-22 109.8 107 55.1
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 4.3e-22 109.4 89 60.7
AL2G20190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 2.3e-20 103.6 72 79.2
A09p43080 Brassica napus HOM05D008309 ORTHO05D010308 5.2e-20 102.4 52 100.0
C03p71000 Brassica napus HOM05D008309 ORTHO05D010308 4.9e-18 95.9 62 66.1
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 6.4e-18 95.5 106 45.3
Peaxi162Scf00417g00048 Petunia axillaris HOM05D002954 ORTHO05D003353 1.1e-17 94.7 158 31.6
BolC3t19382H Brassica oleracea HOM05D008309 ORTHO05D010308 1.8e-17 94.0 57 68.4
Lsat_1_v5_gn_7_106640 Lactuca sativa HOM05D011604 ORTHO05D012513 6.6e-15 85.5 152 32.9
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 4.3e-14 82.8 71 57.7
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 5.6e-14 82.4 72 58.3
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 5.6e-14 82.4 72 58.3
Peaxi162Scf01071g00046 Petunia axillaris HOM05D040622 ORTHO05D010308 6.2e-13 79.0 203 26.6
TAR625G0072 Trochodendron aralioides HOM05D009698 ORTHO05D000385 4.0e-12 76.3 142 32.4
Peaxi162Scf02065g00005 Petunia axillaris HOM05D002954 ORTHO05D010308 6.8e-12 75.5 170 27.6
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 3.4e-11 73.2 96 37.5
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 3.4e-11 73.2 214 27.6
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 9.8e-11 71.6 107 36.4
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 9.8e-11 71.6 208 26.4
BolC4t26475H Brassica oleracea HOM05D008309 ORTHO05D010308 2.2e-10 70.5 76 51.3
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 2.9e-10 70.1 275 22.9
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 2.9e-10 70.1 275 22.9
Nitab4.5_0000581g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.3e-10 68.6 175 32.6
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.4e-09 67.0 45 57.8
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.4e-09 67.0 104 39.4
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 5.4e-09 65.9 104 38.5
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 5.4e-09 65.9 91 42.9
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.4e-09 65.9 87 42.5
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.0e-09 65.5 104 37.5
arahy.Tifrunner.gnm1.ann1.R8QYAJ Arachis hypogaea HOM05D009662 ORTHO05D003353 9.2e-09 65.1 136 29.4
arahy.Tifrunner.gnm1.ann1.FG1AAR Arachis hypogaea HOM05D009662 ORTHO05D003353 1.2e-08 64.7 85 38.8
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.2e-08 64.7 104 38.5
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 1.2e-08 64.7 87 33.3
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.1e-08 63.9 106 36.8
Ah.14g084400 Amaranthus hybridus HOM05D009900 ORTHO05D011543 3.5e-08 63.2 177 26.0
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 3.5e-08 63.2 99 36.4
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 3.5e-08 63.2 82 41.5
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 4.6e-08 62.8 104 35.6
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.6e-08 62.8 82 40.2
arahy.Tifrunner.gnm1.ann1.C14DTV Arachis hypogaea HOM05D009662 ORTHO05D003353 7.8e-08 62.0 95 35.8
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.8e-08 62.0 110 39.1
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.8e-08 62.0 110 39.1
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-07 61.2 104 34.6
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-07 61.2 102 36.3
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-07 61.2 104 34.6
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 1.3e-07 61.2 167 24.6
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.3e-07 61.2 103 36.9
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-07 60.8 103 40.8
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-07 60.8 103 40.8
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-07 60.8 103 40.8
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-07 60.8 103 40.8
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.3e-07 60.5 103 40.8
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 2.3e-07 60.5 104 34.6
TAR383G0561 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.0e-07 60.1 182 24.7
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 3.9e-07 59.7 77 39.0
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 3.9e-07 59.7 87 35.6
COL.COLO4_21802 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.9e-07 59.7 114 33.3
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.9e-07 59.7 120 35.0
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 3.9e-07 59.7 90 40.0
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.9e-07 59.7 86 36.0
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.9e-07 59.7 176 27.8
TAR629G1726 Trochodendron aralioides HOM05D000969 ORTHO05D000899 3.9e-07 59.7 129 31.0
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.0e-07 59.3 103 39.8
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 5.0e-07 59.3 101 41.6
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 6.6e-07 58.9 86 41.9
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 6.6e-07 58.9 197 23.4
TPR.G34719 Trifolium pratense HOM05D002954 ORTHO05D000385 8.6e-07 58.5 103 35.9
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.1e-06 58.2 93 40.9
Nitab4.5_0006078g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-06 58.2 177 28.8
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 1.5e-06 57.8 97 42.3
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 1.5e-06 57.8 105 29.5
Lsat_1_v5_gn_4_141161 Lactuca sativa HOM05D001309 ORTHO05D000385 1.9e-06 57.4 96 32.3
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 1.9e-06 57.4 105 29.5
BcaC06g31080 Brassica carinata HOM05D008309 ORTHO05D010308 2.5e-06 57.0 51 52.9
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 2.5e-06 57.0 98 34.7
Lsat_1_v5_gn_7_21840 Lactuca sativa HOM05D008309 ORTHO05D012513 2.5e-06 57.0 96 32.3
Nitab4.5_0001645g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.5e-06 57.0 211 28.4
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 2.5e-06 57.0 80 37.5
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.5e-06 57.0 91 34.1
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.3e-06 56.6 84 41.7
Peaxi162Scf00006g00207 Petunia axillaris HOM05D002954 ORTHO05D003353 4.3e-06 56.2 109 29.4
TPR.G24473 Trifolium pratense HOM05D024240 ORTHO05D000385 4.3e-06 56.2 95 37.9
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.3e-06 56.2 117 34.2
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 5.6e-06 55.8 83 38.6
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 5.6e-06 55.8 83 38.6
Peaxi162Scf00109g00210 Petunia axillaris HOM05D002954 ORTHO05D003353 5.6e-06 55.8 102 29.4
Phvul.001G118100 Phaseolus vulgaris HOM05D002954 ORTHO05D000385 5.6e-06 55.8 193 30.1
Ca_28512_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 7.3e-06 55.5 93 38.7
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.3e-06 55.5 104 34.6
vmacro00665 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 7.3e-06 55.5 152 28.9
Ah.04g157650 Amaranthus hybridus HOM05D009900 ORTHO05D011543 9.5e-06 55.1 146 27.4
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 9.5e-06 55.1 115 33.9


User provided reference genes

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