Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 8.6e-81 303.5 145 100.0
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 4.7e-71 271.2 141 93.6
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 1.7e-65 252.7 139 88.5
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 7.3e-64 247.3 139 89.2
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 2.1e-63 245.7 139 88.5
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 8.1e-63 243.8 145 85.5
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 2.9e-60 235.3 117 97.4
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 2.0e-53 212.6 111 94.6
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 2.4e-43 179.1 94 91.5
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 5.3e-38 161.4 86 89.5
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 2.9e-36 155.6 80 92.5
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 3.7e-31 138.7 75 92.0
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 9.3e-27 124.0 103 63.1
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 7.9e-26 120.9 103 62.1
BcaB05g23518 Brassica carinata HOM05D003546 ORTHO05D014122 1.9e-24 116.3 82 75.6
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 7.4e-24 114.4 95 63.2
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 4.8e-23 111.7 86 67.4
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 3.1e-22 109.0 90 64.4
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 7.6e-21 104.4 68 80.9
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 7.6e-21 104.4 68 80.9
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 1.0e-20 104.0 68 79.4
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.3e-20 103.6 71 76.1
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 2.2e-20 102.8 55 90.9
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 2.2e-20 102.8 55 90.9
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 2.9e-20 102.4 62 87.1
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 6.5e-20 101.3 55 90.9
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 1.4e-19 100.1 55 89.1
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 1.9e-19 99.8 55 89.1
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 9.3e-19 97.4 55 87.3
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 1.6e-18 96.7 55 87.3
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.1e-18 96.3 54 85.2
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 2.1e-18 96.3 55 83.6
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 4.6e-18 95.1 87 64.4
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 4.6e-18 95.1 55 85.5
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 4.6e-18 95.1 55 81.8
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.0e-17 94.0 99 55.6
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.3e-17 92.8 86 57.0
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 2.3e-17 92.8 86 57.0
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 2.3e-17 92.8 86 57.0
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 2.3e-17 92.8 101 53.5
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 2.3e-17 92.8 55 80.0
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 3.0e-17 92.4 86 61.6
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 3.9e-17 92.0 64 71.9
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 3.9e-17 92.0 55 76.4
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 3.9e-17 92.0 55 80.0
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 5.1e-17 91.7 55 76.4
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 5.1e-17 91.7 55 80.0
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 5.1e-17 91.7 55 78.2
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 5.1e-17 91.7 55 80.0
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 6.7e-17 91.3 55 78.2
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 6.7e-17 91.3 99 54.5
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 8.7e-17 90.9 55 78.2
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 8.7e-17 90.9 55 78.2
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 8.7e-17 90.9 98 55.1
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 8.7e-17 90.9 55 76.4
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.1e-16 90.5 99 54.5
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.5e-16 90.1 55 74.5
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 1.9e-16 89.7 70 61.4
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.9e-16 89.7 86 57.0
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.9e-16 89.7 55 78.2
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 2.5e-16 89.4 55 78.2
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 2.5e-16 89.4 99 53.5
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 2.5e-16 89.4 99 53.5
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 2.5e-16 89.4 99 53.5
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 2.5e-16 89.4 61 65.6
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 2.5e-16 89.4 55 78.2
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 2.5e-16 89.4 55 78.2
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 3.3e-16 89.0 55 78.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.3e-16 89.0 55 78.2
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 3.3e-16 89.0 55 78.2
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 4.3e-16 88.6 86 57.0
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 4.3e-16 88.6 86 57.0
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 4.3e-16 88.6 66 71.2
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 4.3e-16 88.6 55 78.2
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 4.3e-16 88.6 55 76.4
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 4.3e-16 88.6 55 76.4
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 4.3e-16 88.6 59 69.5
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 5.7e-16 88.2 58 75.9
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 5.7e-16 88.2 55 76.4
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 5.7e-16 88.2 56 73.2
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 5.7e-16 88.2 99 52.5
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 7.4e-16 87.8 55 76.4
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 7.4e-16 87.8 55 76.4
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 7.4e-16 87.8 55 76.4
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 9.7e-16 87.4 55 76.4
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 9.7e-16 87.4 55 72.7
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 9.7e-16 87.4 55 74.5
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 9.7e-16 87.4 55 70.9
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 1.3e-15 87.0 54 74.1
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.6e-15 86.7 55 74.5
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 1.6e-15 86.7 55 74.5
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.6e-15 86.7 55 74.5
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 2.2e-15 86.3 55 72.7
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.2e-15 86.3 55 74.5
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 2.8e-15 85.9 48 89.6
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 2.8e-15 85.9 55 76.4
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 2.8e-15 85.9 55 72.7
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 72.7
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 69.1
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 69.1
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 69.1
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 3.7e-15 85.5 59 69.5
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 74.5
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 3.7e-15 85.5 55 74.5
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 4.8e-15 85.1 55 70.9
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 4.8e-15 85.1 55 72.7
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 8.2e-15 84.3 86 55.8
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 8.2e-15 84.3 55 72.7
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.1e-14 84.0 55 70.9
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.1e-14 84.0 55 69.1
C04p41100 Brassica napus HOM05D003546 ORTHO05D014122 1.4e-14 83.6 44 90.9
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 1.4e-14 83.6 55 70.9
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 2.4e-14 82.8 56 67.9
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 3.1e-14 82.4 55 69.1
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 3.1e-14 82.4 55 69.1
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 3.1e-14 82.4 87 56.3
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 3.1e-14 82.4 54 72.2
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 4.1e-14 82.0 55 70.9
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 5.3e-14 81.6 49 83.7
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 5.3e-14 81.6 54 68.5
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 6.9e-14 81.3 53 71.7
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 3.4e-13 79.0 55 70.9
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 1.0e-12 77.4 86 50.0
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 1.3e-12 77.0 55 61.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 1.3e-12 77.0 70 52.9
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 2.2e-12 76.3 55 63.6
BcaC02g08004 Brassica carinata HOM05D003546 ORTHO05D027045 3.8e-12 75.5 86 53.5
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 3.8e-12 75.5 45 82.2
A09p22480 Brassica napus HOM05D003546 ORTHO05D014122 3.8e-12 75.5 50 80.0
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 5.0e-12 75.1 55 61.8
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 6.5e-12 74.7 55 61.8
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 8.5e-12 74.3 49 77.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 8.5e-12 74.3 59 59.3
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 1.9e-11 73.2 55 61.8
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 2.5e-11 72.8 49 75.5
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 5.5e-11 71.6 55 61.8
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 7.2e-11 71.2 55 60.0
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 1.6e-10 70.1 55 56.4
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.4e-09 67.0 55 56.4
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 3.0e-09 65.9 38 78.9
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 3.0e-09 65.9 38 78.9
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 2.5e-08 62.8 62 51.6
C04p59530 Brassica napus HOM05D003546 ORTHO05D027045 3.3e-08 62.4 64 56.2
BolC4t27459H Brassica oleracea HOM05D003546 ORTHO05D027045 3.3e-08 62.4 64 56.2
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 4.3e-08 62.0 55 56.4
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 5.7e-08 61.6 33 87.9
C07p60450 Brassica napus HOM05D003546 ORTHO05D027045 9.7e-08 60.8 64 53.1
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 1.3e-07 60.5 62 48.4
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 2.2e-07 59.7 56 50.0
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 2.8e-07 59.3 62 46.8
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 4.8e-07 58.5 56 51.8
BcaB01g02368 Brassica carinata HOM05D047160 ORTHO05D096100 6.3e-07 58.2 57 59.6
C01p09430 Brassica napus HOM05D063129 ORTHO05D041175 6.3e-07 58.2 61 59.0
A05p16200 Brassica napus HOM05D055649 ORTHO05D101691 8.2e-07 57.8 39 79.5
A09p25380 Brassica napus HOM05D055649 ORTHO05D097052 8.2e-07 57.8 39 79.5
BolC1t00931H Brassica oleracea HOM05D063129 ORTHO05D041175 1.8e-06 56.6 60 58.3
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 1.8e-06 56.6 35 68.6
BcaB08g35084 Brassica carinata HOM05D003546 ORTHO05D005667 5.3e-06 55.1 29 93.1
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 9.1e-06 54.3 35 65.7


User provided reference genes

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