Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-69 266.2 129 100.0
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.3e-69 266.2 129 100.0
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 3.1e-58 228.4 128 89.1
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 4.7e-54 214.5 131 83.2
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.8e-50 202.6 121 83.5
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 8.0e-46 187.2 129 76.0
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 6.3e-43 177.6 135 71.1
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 1.4e-42 176.4 135 69.6
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 1.4e-42 176.4 135 69.6
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 1.4e-42 176.4 135 69.6
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 4.1e-42 174.9 131 71.0
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 1.7e-40 169.5 139 65.5
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 2.5e-39 165.6 131 68.7
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.1e-38 162.5 141 63.1
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 8.0e-38 160.6 123 69.1
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.7e-35 152.9 133 65.4
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.4e-34 149.8 136 61.0
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 9.1e-34 147.1 137 62.0
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 5.9e-33 144.4 131 61.1
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 5.9e-33 144.4 131 61.1
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 5.9e-33 144.4 131 61.1
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.1e-31 140.2 137 57.7
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.6e-22 109.8 140 47.9
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 3.0e-21 105.5 68 75.0
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 3.0e-21 105.5 68 75.0
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.5e-20 103.2 122 52.5
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 4.4e-20 101.7 118 52.5
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.8e-18 96.3 129 48.1
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.2e-17 93.6 107 54.2
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 1.6e-17 93.2 107 55.1
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 1.6e-17 93.2 107 55.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 1.6e-17 93.2 105 50.5
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.7e-16 89.7 100 48.0
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.7e-16 89.7 108 51.9
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 2.3e-16 89.4 108 52.8
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 2.3e-16 89.4 108 52.8
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 2.3e-16 89.4 108 52.8
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 3.9e-16 88.6 108 52.8
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.9e-16 88.6 97 49.5
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 5.0e-16 88.2 104 50.0
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 8.6e-16 87.4 107 47.7
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 1.1e-15 87.0 108 50.0
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.1e-15 87.0 114 50.0
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-15 87.0 107 48.6
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.5e-15 85.9 116 48.3
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 3.3e-15 85.5 108 51.9
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.3e-15 85.5 108 51.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.3e-15 85.5 108 46.3
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.3e-15 85.5 108 46.3
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.3e-15 85.5 102 50.0
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.3e-15 85.5 102 52.0
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 3.3e-15 85.5 108 49.1
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 5.6e-15 84.7 111 52.3
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 5.6e-15 84.7 108 45.4
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 7.3e-15 84.3 101 47.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 7.3e-15 84.3 109 45.0
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 7.3e-15 84.3 110 47.3
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 9.5e-15 84.0 101 50.5
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.2e-14 83.6 119 44.5
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.2e-14 83.6 109 48.6
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.6e-14 83.2 108 44.4
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.8e-14 82.4 118 44.1
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 3.6e-14 82.0 108 47.2
BcaB02g07151 Brassica carinata HOM05D002704 ORTHO05D002891 4.7e-14 81.6 63 66.7
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 4.7e-14 81.6 115 45.2
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.1e-13 80.5 115 45.2
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.8e-13 79.7 105 44.8
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 2.3e-13 79.3 120 42.5
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.1e-13 79.0 107 42.1
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 3.1e-13 79.0 98 53.1
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 3.1e-13 79.0 98 53.1
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 3.1e-13 79.0 102 52.0
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.2e-13 78.2 51 66.7
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 8.9e-13 77.4 101 44.6
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.2e-12 77.0 101 46.5
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.2e-12 77.0 110 45.5
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.2e-12 77.0 104 44.2
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.2e-12 77.0 100 46.0
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 1.2e-12 77.0 103 44.7
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 1.5e-12 76.6 104 51.0
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.5e-12 76.6 108 42.6
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.5e-12 76.6 103 42.7
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.0e-12 76.3 126 42.9
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 2.0e-12 76.3 113 44.2
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.4e-12 75.5 117 39.3
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.4e-12 75.1 113 41.6
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 4.4e-12 75.1 111 42.3
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 5.8e-12 74.7 114 43.0
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 7.5e-12 74.3 110 43.6
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.5e-12 74.3 51 62.7
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 9.8e-12 73.9 121 38.8
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 9.8e-12 73.9 108 41.7
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 9.8e-12 73.9 108 44.4
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 9.8e-12 73.9 108 42.6
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.3e-11 73.6 109 46.8
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 1.3e-11 73.6 114 42.1
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 1.7e-11 73.2 128 43.0
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.7e-11 73.2 114 42.1
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.7e-11 73.2 101 44.6
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 2.9e-11 72.4 136 40.4
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.9e-11 72.4 126 39.7
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.9e-11 72.4 112 44.6
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 2.9e-11 72.4 99 45.5
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.9e-11 72.4 105 42.9
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 3.7e-11 72.0 104 42.3
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.7e-11 72.0 112 42.0
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 4.9e-11 71.6 109 43.1
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 4.9e-11 71.6 118 40.7
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 4.9e-11 71.6 116 43.1
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.4e-11 71.2 101 44.6
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 6.4e-11 71.2 101 40.6
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.3e-11 70.9 115 37.4
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 8.3e-11 70.9 51 60.8
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.1e-10 70.5 117 37.6
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-10 70.5 101 45.5
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 1.1e-10 70.5 109 42.2
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.4e-10 70.1 101 43.6
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.4e-10 70.1 99 45.5
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.4e-10 69.3 53 58.5
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 2.4e-10 69.3 99 43.4
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 2.4e-10 69.3 111 45.0
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 3.2e-10 68.9 102 42.2
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.2e-10 68.9 102 44.1
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.2e-10 68.9 119 41.2
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.1e-10 68.6 101 42.6
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 4.1e-10 68.6 110 41.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 4.1e-10 68.6 106 42.5
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 4.1e-10 68.6 115 40.9
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.4e-10 68.2 94 45.7
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 5.4e-10 68.2 115 39.1
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 5.4e-10 68.2 119 38.7
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 7.0e-10 67.8 93 38.7
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 9.2e-10 67.4 90 43.3
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 9.2e-10 67.4 106 41.5
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 9.2e-10 67.4 96 42.7
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.2e-09 67.0 101 38.6
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.2e-09 67.0 123 38.2
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.2e-09 67.0 107 41.1
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 1.6e-09 66.6 45 60.0
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 1.6e-09 66.6 101 43.6
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.0e-09 66.2 117 37.6
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.7e-09 65.9 123 39.8
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.7e-09 65.9 90 42.2
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 4.6e-09 65.1 121 38.0
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 6.0e-09 64.7 40 67.5
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 6.0e-09 64.7 107 39.3
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 6.0e-09 64.7 98 39.8
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 7.8e-09 64.3 81 45.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.0e-08 63.9 111 38.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.0e-08 63.9 37 73.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-08 63.2 58 53.4
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.3e-08 62.8 152 32.2
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 3.0e-08 62.4 127 33.1
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 3.0e-08 62.4 113 38.9
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.0e-08 62.4 140 35.7
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 3.0e-08 62.4 112 39.3
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 3.0e-08 62.4 104 42.3
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 5.0e-08 61.6 113 39.8
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 8.6e-08 60.8 119 33.6
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 1.1e-07 60.5 100 39.0
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.1e-07 60.5 100 41.0
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 1.1e-07 60.5 43 62.8
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.5e-07 60.1 99 38.4
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.5e-07 59.3 42 54.8
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 4.3e-07 58.5 112 39.3
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.3e-07 58.5 97 40.2
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.3e-07 57.8 103 38.8
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.3e-07 57.8 109 37.6
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 9.5e-07 57.4 116 32.8
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 1.6e-06 56.6 45 57.8
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 1.6e-06 56.6 88 37.5
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.6e-06 55.5 100 39.0
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.6e-06 55.5 103 36.9
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.6e-06 55.5 93 38.7
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 4.7e-06 55.1 32 68.8
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.1e-06 54.3 103 39.8


User provided reference genes

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