Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 3.8e-157 558.1 286 100.0
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.9e-156 555.8 286 99.7
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 4.2e-156 554.7 286 99.3
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 4.7e-155 551.2 286 98.6
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 7.9e-155 550.4 286 98.6
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-153 546.6 286 97.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.8e-149 531.6 286 94.1
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 5.0e-149 531.2 276 97.5
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.9e-148 529.3 286 93.7
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.9e-148 529.3 286 93.4
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 4.2e-148 528.1 286 93.4
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.4e-148 526.9 286 92.7
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 4.7e-147 524.6 286 92.3
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.5e-134 481.9 286 87.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 7.7e-134 480.7 286 87.1
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.0e-133 480.3 286 85.7
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.8e-133 478.4 286 86.0
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 6.5e-133 477.6 286 85.7
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 3.2e-132 475.3 286 86.4
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 5.5e-132 474.6 286 86.0
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 5.5e-132 474.6 286 86.4
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 8.0e-131 470.7 284 84.9
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 7.0e-127 457.6 284 83.1
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.7e-125 453.0 274 85.4
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-124 450.3 328 73.8
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.0e-122 442.2 286 78.3
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 3.0e-122 442.2 286 78.3
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.0e-122 441.8 286 78.3
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.2e-121 440.3 284 79.2
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 2.0e-121 439.5 286 78.3
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 2.6e-121 439.1 286 78.3
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.4e-121 438.7 284 77.5
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 5.7e-121 438.0 286 76.6
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.5e-121 437.6 286 79.0
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.3e-120 436.8 286 76.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.3e-120 436.8 286 78.3
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.3e-120 436.8 286 78.3
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.7e-120 436.4 274 83.2
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.7e-120 436.4 286 77.6
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 2.2e-120 436.0 286 76.9
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.2e-120 436.0 286 78.3
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.7e-120 435.3 286 78.7
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.1e-119 433.7 285 76.5
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.1e-119 433.7 285 81.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-119 433.7 285 81.1
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.1e-119 433.7 286 77.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.1e-119 433.7 286 77.3
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.6e-118 429.9 286 75.5
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.0e-118 429.5 286 76.9
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.7e-118 429.1 252 86.9
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.3e-117 426.8 286 74.8
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 2.3e-117 426.0 286 75.2
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 3.0e-117 425.6 286 74.8
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.0e-117 425.6 286 75.2
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 3.9e-117 425.2 286 74.8
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 6.6e-117 424.5 286 74.5
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 6.6e-117 424.5 286 73.8
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-116 423.7 286 75.2
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.1e-116 423.7 286 75.2
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.1e-116 423.7 286 75.2
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.5e-116 423.3 286 75.2
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 3.3e-116 422.2 286 73.8
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.3e-116 421.8 286 74.1
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 5.6e-116 421.4 286 74.8
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 7.3e-116 421.0 286 74.8
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.5e-116 420.6 286 74.1
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 9.5e-116 420.6 286 74.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 9.5e-116 420.6 286 74.8
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 9.5e-116 420.6 285 74.7
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 1.2e-115 420.2 286 73.4
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.6e-115 419.9 286 74.1
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 74.1
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 73.8
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 74.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 2.1e-115 419.5 286 73.1
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.8e-115 419.1 286 72.0
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.8e-115 419.1 290 74.5
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 8.0e-115 417.5 278 79.9
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.4e-114 416.8 286 72.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 2.3e-114 416.0 297 71.7
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 4.0e-114 415.2 286 75.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 4.0e-114 415.2 286 72.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 8.9e-114 414.1 342 64.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 8.9e-114 414.1 273 75.5
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.2e-113 413.7 286 72.0
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.2e-113 413.7 286 74.8
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.0e-113 412.9 286 73.1
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.4e-113 412.1 286 72.7
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 3.4e-113 412.1 286 70.6
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.4e-113 411.8 288 72.6
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 9.8e-113 410.6 286 73.4
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.9e-112 408.3 281 75.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-111 407.1 286 72.4
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.9e-111 406.4 286 71.3
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 2.4e-111 406.0 281 71.2
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 5.4e-111 404.8 286 73.1
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 7.0e-111 404.4 286 71.3
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 7.8e-110 401.0 294 70.4
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 7.8e-110 401.0 320 65.0
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.3e-109 400.2 286 71.3
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 2.3e-109 399.4 286 69.6
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.1e-108 397.1 286 70.6
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.5e-108 396.0 286 70.3
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.5e-108 396.0 286 68.9
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 4.3e-108 395.2 286 68.9
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.3e-108 394.4 292 69.2
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 9.5e-108 394.0 286 71.3
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.5e-108 394.0 286 71.7
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.2e-107 393.7 270 74.4
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 6.8e-106 387.9 268 75.0
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.2e-105 387.1 286 69.6
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 7.5e-105 384.4 270 71.1
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.2e-104 382.9 286 66.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.2e-104 382.9 286 66.1
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 3.7e-104 382.1 289 70.6
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 8.3e-104 380.9 290 67.2
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 4.1e-103 378.6 270 71.1
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.6e-102 376.7 283 67.8
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.0e-102 374.8 285 67.0
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.0e-101 374.0 251 73.7
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.7e-101 373.2 271 69.4
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 5.1e-101 371.7 251 76.5
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 8.6e-101 370.9 299 67.2
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.1e-100 370.5 286 66.1
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.5e-100 370.2 270 69.3
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.3e-100 367.9 290 65.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 9.5e-100 367.5 317 61.8
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.2e-99 367.1 286 67.8
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.3e-98 362.8 251 78.5
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 6.8e-98 361.3 286 68.5
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.4e-97 359.0 291 63.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 3.7e-96 355.5 286 66.8
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.4e-95 353.6 287 62.0
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 1.2e-94 350.5 286 65.0
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.3e-92 341.3 310 59.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.8e-90 334.7 261 69.0
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.0e-89 333.2 342 55.8
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.2e-88 329.7 281 67.3
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.4e-87 327.0 217 77.9
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.2e-87 325.9 283 61.8
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 4.2e-87 325.5 235 68.9
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.1e-87 324.7 270 61.9
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 5.6e-84 315.1 227 72.2
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 7.3e-84 314.7 217 72.8
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.3e-80 303.9 286 55.2
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.6e-75 287.0 271 56.5
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 4.8e-67 258.8 243 59.7
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 8.1e-67 258.1 217 59.4
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 5.8e-65 251.9 272 56.2
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-50 203.8 284 48.2
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 2.4e-50 203.4 176 56.8
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.9e-49 198.7 174 62.1
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.9e-48 196.4 175 59.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.8e-45 184.9 331 42.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.5e-44 184.1 224 50.0
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.0e-40 171.4 123 67.5
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.0e-37 159.8 124 70.2
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.3e-34 149.1 183 48.6
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.4e-26 123.6 85 68.2
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 5.3e-26 122.5 221 30.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 2.0e-25 120.6 277 38.6
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.0e-25 120.6 286 38.5
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.2e-19 100.5 63 76.2
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.2e-19 100.5 123 46.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.1e-18 96.3 184 34.8
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.0e-18 95.5 176 36.4
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.0e-16 91.7 145 38.6
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.1e-14 84.0 52 82.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.3e-11 72.0 47 72.3
CBR_g928 Chara braunii HOM05D015229 ORTHO05D017822 2.8e-06 57.0 172 27.9


User provided reference genes

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