Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.9e-66 253.4 127 100.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.3e-28 128.3 102 68.6
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 5.6e-28 127.9 96 72.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 9.6e-28 127.1 102 68.6
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.2e-27 124.4 96 67.7
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.2e-25 120.2 96 65.6
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 3.4e-25 118.6 102 63.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.7e-24 116.3 96 65.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 3.8e-24 115.2 95 66.3
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.8e-24 115.2 95 66.3
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 4.9e-24 114.8 96 65.6
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 4.9e-24 114.8 96 65.6
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 8.4e-24 114.0 96 65.6
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 8.4e-24 114.0 96 65.6
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 3.2e-23 112.1 102 57.8
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 7.4e-20 100.9 96 58.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 8.2e-19 97.4 97 53.6
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 2.4e-18 95.9 97 53.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 1.5e-17 93.2 97 54.6
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.6e-17 90.9 95 49.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.7e-16 89.7 97 51.5
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 6.5e-16 87.8 100 50.0
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 6.5e-16 87.8 101 47.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-15 87.0 94 50.0
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.9e-15 86.3 94 50.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.9e-15 86.3 98 45.9
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.9e-15 86.3 101 46.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.9e-15 86.3 97 50.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.5e-15 85.9 94 48.9
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.2e-15 85.1 98 45.9
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.2e-15 85.1 94 48.9
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.2e-15 85.1 101 46.5
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.5e-15 84.7 94 48.9
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 5.5e-15 84.7 101 45.5
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 5.5e-15 84.7 101 45.5
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.2e-15 84.3 97 49.5
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 7.2e-15 84.3 96 47.9
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 7.2e-15 84.3 96 47.9
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 7.2e-15 84.3 78 53.8
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 9.4e-15 84.0 95 48.4
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.4e-15 84.0 97 47.4
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.2e-14 83.6 96 46.9
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.6e-14 83.2 97 47.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.6e-14 83.2 78 53.8
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.1e-14 82.8 80 56.2
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.7e-14 82.4 77 55.8
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.7e-14 82.4 97 49.5
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.7e-14 82.4 101 46.5
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.6e-14 82.0 101 44.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.6e-14 81.6 72 54.2
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.6e-14 81.6 70 58.6
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.6e-14 81.6 73 54.8
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 6.1e-14 81.3 70 58.6
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 7.9e-14 80.9 97 44.3
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 7.9e-14 80.9 73 57.5
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 7.9e-14 80.9 75 53.3
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.0e-13 80.5 101 44.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.8e-13 79.7 70 54.3
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.8e-13 79.7 97 46.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.3e-13 79.3 101 40.6
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.3e-13 79.3 97 46.4
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 3.0e-13 79.0 97 45.4
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 3.9e-13 78.6 97 46.4
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.9e-13 78.6 91 47.3
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 8.8e-13 77.4 97 47.4
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.5e-12 76.6 98 43.9
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.5e-12 76.6 73 54.8
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.5e-12 75.9 70 51.4
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 2.5e-12 75.9 101 37.6
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.5e-12 75.9 70 52.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.3e-12 75.5 97 45.4
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 4.3e-12 75.1 96 41.7
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 4.3e-12 75.1 94 43.6
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 7.4e-12 74.3 90 44.4
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 9.7e-12 73.9 98 42.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 9.7e-12 73.9 115 39.1
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.3e-11 73.6 81 48.1
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.3e-11 73.6 72 50.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 2.2e-11 72.8 96 39.6
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.2e-11 72.8 96 42.7
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.2e-11 72.8 73 50.7
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.8e-11 72.4 105 39.0
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 3.7e-11 72.0 78 44.9
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 3.7e-11 72.0 73 46.6
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 3.7e-11 72.0 95 43.2
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.7e-11 72.0 101 38.6
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.8e-11 71.6 78 44.9
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 6.3e-11 71.2 117 35.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.1e-10 70.5 100 38.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.4e-10 70.1 97 38.1
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.4e-10 70.1 100 40.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.4e-10 70.1 77 45.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.8e-10 69.7 69 50.7
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.8e-10 69.7 69 50.7
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.4e-10 69.3 74 45.9
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.1e-10 68.9 101 40.6
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 3.1e-10 68.9 98 36.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 4.1e-10 68.6 73 45.2
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.3e-10 68.2 74 43.2
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.2e-09 67.0 116 33.6
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.0e-09 66.2 75 41.3
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.0e-09 66.2 80 42.5
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 2.9e-08 62.4 86 44.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 8.5e-08 60.8 69 46.4
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.1e-07 60.5 64 46.9
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.6e-06 55.5 92 33.7
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 7.9e-06 54.3 96 35.4


User provided reference genes

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