Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.8e-281 971.8 470 100.0
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 4.6e-277 957.2 470 98.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 4.6e-277 957.2 470 98.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.3e-276 954.9 470 97.7
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 2.4e-273 944.9 470 97.7
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.2e-264 916.0 471 94.7
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.0e-260 901.4 473 92.8
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 3.6e-245 851.3 480 86.9
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.5e-243 845.9 475 86.9
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.1e-241 839.7 479 86.0
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 2.0e-240 835.5 478 85.4
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.1e-225 786.6 473 81.4
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.1e-212 743.4 396 88.9
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 2.7e-208 728.8 476 76.1
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.4e-193 679.9 468 69.9
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 3.0e-191 672.2 467 70.7
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.9e-191 671.8 466 70.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.6e-191 671.0 472 70.1
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.1e-190 670.2 456 70.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 1.5e-190 669.8 472 69.9
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 3.3e-190 668.7 468 69.9
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.6e-189 666.4 473 68.3
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.1e-188 663.7 469 67.4
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 2.4e-188 662.5 460 69.6
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 5.2e-188 661.4 478 68.6
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 6.9e-188 661.0 471 68.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 5.8e-187 657.9 466 69.3
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 9.9e-187 657.1 483 67.9
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.7e-186 656.4 401 76.6
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.2e-185 651.7 465 68.6
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 4.2e-185 651.7 472 68.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 9.3e-185 650.6 456 69.3
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.6e-184 649.8 456 69.1
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.1e-184 649.4 473 67.9
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.0e-184 647.9 473 68.1
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 7.8e-184 647.5 471 66.7
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.0e-183 647.1 404 74.3
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 2.3e-183 646.0 460 68.3
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 3.9e-183 645.2 464 67.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.5e-182 643.3 475 65.9
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 3.3e-182 642.1 468 67.5
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 7.3e-182 641.0 428 69.9
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 2.8e-181 639.0 474 66.7
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 3.6e-181 638.6 475 65.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 3.6e-181 638.6 476 66.0
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.8e-180 636.3 469 65.2
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.4e-180 636.0 491 63.3
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 4.0e-180 635.2 476 66.2
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 4.0e-180 635.2 476 66.8
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 6.9e-180 634.4 473 67.4
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.5e-179 633.3 470 68.3
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 7.6e-179 630.9 455 67.9
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 7.6e-179 630.9 474 65.6
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 9.9e-179 630.6 418 70.6
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 9.9e-179 630.6 462 67.5
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 3.8e-178 628.6 474 65.6
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.1e-177 627.1 416 71.2
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 2.4e-177 625.9 418 71.3
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 4.2e-177 625.2 477 65.2
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.2e-176 623.6 471 65.4
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.2e-176 623.6 474 65.2
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 6.0e-176 621.3 460 65.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 7.9e-176 620.9 495 63.8
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 1.8e-175 619.8 474 64.6
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.3e-175 619.4 454 66.7
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 2.3e-175 619.4 421 69.1
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 5.1e-175 618.2 419 69.7
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 6.7e-175 617.8 405 71.6
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 1.1e-174 617.1 462 64.3
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.5e-174 616.7 480 63.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 4.3e-174 615.1 471 65.4
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.7e-173 612.1 468 64.7
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 2.4e-172 609.4 401 71.1
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.0e-171 606.3 467 62.7
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 3.4e-171 605.5 473 62.8
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.5e-171 605.1 463 63.5
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.3e-170 603.6 412 69.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 1.7e-170 603.2 463 63.5
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.2e-170 602.8 486 61.9
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 4.9e-170 601.7 460 64.1
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.4e-170 601.3 465 63.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 6.4e-170 601.3 423 67.8
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.4e-169 600.1 487 61.6
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.2e-168 597.0 417 67.1
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 7.9e-168 594.3 409 67.7
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 2.3e-167 592.8 400 69.0
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.8e-165 585.9 405 66.7
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.3e-161 570.9 415 64.3
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.6e-160 570.1 414 67.4
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 3.5e-160 568.9 359 72.4
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 4.6e-160 568.5 476 60.5
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.0e-159 567.4 386 66.3
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 3.9e-159 565.5 420 63.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.5e-158 562.8 414 62.6
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.1e-156 557.4 454 60.6
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.4e-155 552.4 360 73.6
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 4.5e-155 552.0 406 63.3
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.0e-154 550.8 363 71.3
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.9e-151 538.9 460 60.7
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 6.7e-151 538.1 420 63.8
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.2e-146 523.1 358 67.9
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.9e-143 512.3 334 72.2
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 2.6e-142 509.6 383 64.8
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 9.1e-140 501.1 430 58.4
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.9e-139 498.4 382 63.1
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 3.1e-124 449.5 401 52.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 9.1e-124 448.0 410 50.5
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.6e-123 447.2 409 53.8
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.2e-121 439.1 406 51.5
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.2e-117 426.8 429 53.1
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.6e-115 420.6 312 66.7
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.6e-115 420.6 250 79.2
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.4e-108 397.5 438 45.4
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.4e-95 354.4 269 65.1
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.3e-85 321.2 247 57.1
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 5.3e-71 272.7 165 77.6
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.3e-69 268.1 194 62.9
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 1.9e-65 254.2 166 71.7
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.3e-65 253.4 214 56.5
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.2e-61 240.7 236 58.5
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 4.9e-61 239.6 162 67.9
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 5.3e-47 193.0 133 65.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 5.1e-42 176.4 141 56.0
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 6.3e-32 142.9 86 83.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.2e-29 134.4 476 25.8
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 7.9e-27 125.9 384 27.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 3.8e-21 107.1 476 23.7
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 3.6e-19 100.5 387 27.6
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.7e-17 93.2 55 85.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 1.4e-15 88.6 56 83.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.2e-11 75.5 61 62.3
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.2e-11 75.5 61 62.3
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.0e-10 72.4 103 37.9
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.8e-10 69.3 168 31.5
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 8.3e-08 62.8 102 38.2
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 4.1e-07 60.5 55 49.1
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 3.5e-06 57.4 194 25.8


User provided reference genes

Program Settings