Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 3.7e-129 464.9 241 100.0
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 5.7e-122 441.0 244 95.9
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 4.5e-119 431.4 242 93.8
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-118 429.5 242 93.4
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.7e-118 429.5 242 93.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.5e-109 399.8 243 87.7
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.2e-89 332.8 247 73.7
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.3e-89 330.9 249 73.1
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.8e-84 315.8 256 69.9
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 8.9e-83 310.8 251 69.3
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.6e-82 309.3 248 69.4
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.2e-76 288.1 258 62.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.1e-75 287.3 258 63.2
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.5e-74 283.5 255 62.0
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 2.0e-74 283.1 248 62.9
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 3.4e-74 282.3 257 63.4
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 5.8e-74 281.6 255 62.4
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 2.2e-73 279.6 251 64.1
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 2.2e-73 279.6 251 64.1
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.9e-73 278.5 258 61.6
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.1e-72 277.3 257 61.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 4.2e-72 275.4 257 62.3
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.4e-67 259.6 258 59.3
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 6.6e-62 241.5 250 54.4
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.3e-60 237.3 246 54.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.6e-60 236.9 249 55.4
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.1e-60 236.5 251 54.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.8e-60 236.1 248 54.8
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 4.8e-60 235.3 251 54.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 6.2e-60 235.0 244 55.3
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 6.2e-60 235.0 251 54.2
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.4e-59 233.0 251 53.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.1e-59 232.6 251 53.8
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 9.0e-59 231.1 251 53.4
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 4.5e-58 228.8 251 53.4
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 4.5e-58 228.8 252 54.0
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 5.8e-58 228.4 249 51.8
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.7e-57 226.9 252 54.0
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 8.4e-57 224.6 248 51.2
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 8.4e-57 224.6 253 52.6
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.1e-56 224.2 248 51.2
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.1e-56 224.2 248 52.8
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.4e-56 223.8 250 51.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.9e-56 223.4 255 52.5
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 3.2e-56 222.6 253 51.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 7.1e-56 221.5 237 52.7
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 9.3e-56 221.1 249 49.8
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.6e-55 220.3 236 51.7
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.6e-55 220.3 251 52.6
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 2.7e-55 219.5 257 52.1
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 3.5e-55 219.2 247 51.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 6.0e-55 218.4 255 50.6
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 6.0e-55 218.4 244 50.0
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 7.9e-55 218.0 250 50.8
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 7.9e-55 218.0 256 52.0
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.9e-55 218.0 245 50.2
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.0e-54 217.6 245 51.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.0e-54 217.6 246 50.8
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.3e-54 217.2 240 51.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 2.3e-54 216.5 245 51.0
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.9e-54 215.7 255 51.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.1e-54 215.3 247 50.2
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 5.1e-54 215.3 237 51.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.7e-54 214.9 241 50.2
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 8.7e-54 214.5 240 51.7
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 1.5e-53 213.8 249 50.6
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.5e-53 213.0 253 48.6
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 3.3e-53 212.6 243 51.9
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.6e-53 211.8 247 49.0
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 5.6e-53 211.8 240 50.0
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 9.6e-53 211.1 251 49.8
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 9.6e-53 211.1 252 49.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.6e-52 210.3 252 47.2
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.1e-52 209.9 254 48.0
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 3.7e-52 209.1 248 49.2
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 3.7e-52 209.1 253 49.4
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 3.7e-52 209.1 252 50.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 6.2e-52 208.4 252 47.6
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.4e-51 207.2 240 50.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.4e-51 207.2 250 50.0
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 2.4e-51 206.5 237 49.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 3.1e-51 206.1 236 51.7
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 5.3e-51 205.3 251 47.0
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.2e-50 204.1 255 50.2
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.2e-50 204.1 249 49.8
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 4.5e-50 202.2 224 52.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 7.6e-50 201.4 239 49.4
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.3e-49 200.7 244 47.1
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.7e-49 200.3 242 48.3
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.9e-49 199.5 242 48.8
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 6.5e-49 198.4 224 52.2
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 8.4e-49 198.0 249 49.4
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 8.4e-49 198.0 236 47.9
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.1e-48 197.6 257 48.2
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.1e-48 197.6 236 47.9
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.4e-48 197.2 249 48.6
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.4e-48 197.2 249 48.6
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.4e-48 197.2 234 50.0
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 4.2e-48 195.7 253 47.0
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.6e-47 193.7 241 48.5
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 2.7e-47 193.0 246 46.3
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.7e-47 193.0 238 48.3
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 6.0e-47 191.8 234 51.3
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 6.0e-47 191.8 237 46.4
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.4e-45 184.9 182 55.5
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.3e-44 184.1 227 48.0
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 2.8e-44 183.0 249 47.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 2.0e-42 176.8 238 44.1
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 3.4e-42 176.0 238 46.2
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.0e-41 174.5 123 75.6
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.3e-41 174.1 253 43.9
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.3e-36 157.5 189 47.6
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 5.9e-34 148.7 183 45.9
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.7e-33 147.1 193 43.5
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.7e-28 130.6 123 57.7
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 4.5e-18 95.9 123 48.8
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.1e-16 91.3 141 41.8
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.1e-16 91.3 131 41.2
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.1e-16 91.3 198 32.3
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 4.2e-16 89.4 231 34.2
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 7.2e-16 88.6 140 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 5.2e-14 82.4 175 34.3
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 1.4e-11 74.3 99 44.4
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 4.1e-11 72.8 80 53.8
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.9e-10 68.9 77 51.9
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 2.9e-09 66.6 112 39.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 9.4e-08 61.6 51 54.9
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 3.6e-07 59.7 85 38.8
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 2.3e-06 57.0 62 53.2
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 6.8e-06 55.5 68 45.6


User provided reference genes

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