Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.0e-104 382.1 232 100.0
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.7e-92 342.4 210 99.5
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.0e-87 326.2 210 97.1
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.5e-87 324.3 213 94.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 7.3e-82 307.8 203 95.1
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.1e-74 283.9 208 87.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.5e-74 283.5 210 83.8
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 8.3e-70 267.7 202 80.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.9e-67 258.8 210 78.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 8.6e-67 257.7 207 80.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.7e-65 251.9 209 79.4
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.0e-64 248.8 210 76.7
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 8.7e-59 231.1 202 79.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 4.3e-58 228.8 204 66.7
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 9.0e-56 221.1 194 66.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 9.0e-56 221.1 194 66.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.4e-55 219.2 207 62.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.0e-51 207.6 214 56.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 6.6e-51 204.9 210 61.9
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.9e-50 203.4 125 78.4
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.3e-49 200.7 125 77.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.3e-49 200.7 204 61.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.8e-49 199.5 125 77.6
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.8e-49 199.5 125 77.6
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 8.1e-49 198.0 207 60.4
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-48 197.6 215 69.8
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.1e-48 197.6 211 58.3
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.4e-48 197.2 125 77.6
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.4e-48 197.2 124 77.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.4e-48 196.4 124 77.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.4e-48 196.4 125 76.8
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.0e-48 195.7 125 75.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.0e-48 195.7 125 75.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.0e-48 195.7 124 76.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.3e-48 195.3 125 76.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.9e-48 194.9 121 78.5
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 6.9e-48 194.9 208 58.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 9.0e-48 194.5 125 75.2
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.0e-48 194.5 124 76.6
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.5e-47 193.7 212 58.0
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.5e-47 193.7 125 75.2
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.4e-47 192.6 224 52.7
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.4e-47 192.6 125 75.2
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.4e-47 192.6 213 60.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.4e-47 192.6 125 73.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.5e-47 192.2 125 75.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 4.5e-47 192.2 208 61.5
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 5.8e-47 191.8 213 56.8
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 7.6e-47 191.4 213 54.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.6e-47 191.4 125 72.8
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 9.9e-47 191.0 214 57.9
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.2e-46 189.9 123 75.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.2e-46 189.9 125 76.0
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 2.9e-46 189.5 210 55.7
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.9e-46 189.5 126 74.6
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.8e-46 189.1 210 55.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 4.9e-46 188.7 210 54.3
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 4.9e-46 188.7 210 58.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 6.4e-46 188.3 212 54.2
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 6.4e-46 188.3 125 73.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.4e-46 188.3 202 55.4
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 6.4e-46 188.3 125 72.8
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.4e-46 188.3 212 53.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.4e-46 188.0 125 73.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.4e-46 188.0 127 71.7
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 8.4e-46 188.0 205 62.4
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-45 187.6 206 56.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.4e-45 187.2 126 75.4
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.4e-45 187.2 206 55.8
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.9e-45 186.8 120 73.3
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.9e-45 186.8 125 72.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-45 186.8 125 72.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-45 186.8 209 54.5
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.9e-45 186.8 120 75.0
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.4e-45 186.4 125 72.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 3.2e-45 186.0 125 72.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.2e-45 185.7 125 73.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.2e-45 185.7 209 56.5
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 7.1e-45 184.9 124 73.4
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 7.1e-45 184.9 132 68.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 9.3e-45 184.5 125 72.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 9.3e-45 184.5 125 71.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.2e-44 184.1 125 71.2
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.2e-44 184.1 125 71.2
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.2e-44 184.1 130 70.8
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.2e-44 184.1 125 73.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-44 183.7 124 71.8
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.6e-44 183.7 124 72.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.1e-44 183.3 125 71.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.1e-44 183.3 125 71.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.1e-44 183.3 219 54.8
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.1e-44 183.3 125 71.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.7e-44 183.0 125 70.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.5e-44 182.6 208 58.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.5e-44 182.6 125 72.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.0e-44 181.8 172 60.5
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.0e-44 181.8 125 69.6
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 7.9e-44 181.4 125 70.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.3e-43 180.6 203 55.2
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.3e-43 179.9 125 69.6
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 3.0e-43 179.5 160 60.0
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.9e-43 179.1 125 70.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 5.1e-43 178.7 125 68.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 6.7e-43 178.3 125 70.4
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.7e-43 178.3 124 70.2
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 8.7e-43 177.9 125 69.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.1e-42 177.6 122 72.1
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.5e-42 176.4 120 70.8
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 9.6e-42 174.5 125 70.4
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.3e-41 174.1 203 54.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.2e-41 171.8 207 52.7
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.1e-41 171.4 234 49.1
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 8.1e-41 171.4 125 68.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.4e-40 170.6 211 54.5
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.4e-40 169.9 104 81.7
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.3e-40 168.7 115 72.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.6e-39 166.4 111 72.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 9.9e-39 164.5 102 78.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.7e-38 163.7 108 77.8
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 4.9e-38 162.2 132 62.1
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.4e-37 160.6 125 68.0
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 9.3e-37 157.9 108 71.3
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 4.6e-36 155.6 125 60.0
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.0e-36 155.2 203 52.2
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 8.7e-35 151.4 204 47.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.5e-34 149.8 166 53.0
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 4.3e-34 149.1 95 73.7
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.6e-34 147.9 125 57.6
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-33 147.1 129 59.7
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 6.2e-33 145.2 121 62.8
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.4e-31 139.4 106 62.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 4.9e-30 135.6 106 63.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-29 133.7 107 64.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.5e-29 133.3 101 68.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-28 128.6 98 64.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 7.9e-28 128.3 84 75.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.3e-26 122.5 90 67.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.3e-26 122.5 101 57.4
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 9.7e-26 121.3 122 50.0
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.2e-25 120.2 93 66.7
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-24 117.5 169 49.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.0e-24 114.8 173 48.6
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.2e-23 114.4 82 65.9
BcaB03g11665 Brassica carinata HOM05D004341 ORTHO05D005075 7.6e-23 111.7 99 91.9
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 7.2e-21 105.1 161 49.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-20 104.0 79 64.6
BcaB08g34314 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-19 100.1 101 89.1
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.7e-18 94.7 82 58.5
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.8e-17 93.2 58 79.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 4.5e-15 85.9 74 58.1
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-14 84.0 43 97.7
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.2e-14 83.6 46 82.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 7.2e-13 78.6 52 69.2
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.6e-12 77.4 94 39.4
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.6e-12 77.4 99 39.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-11 73.2 136 44.9
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 6.7e-11 72.0 57 64.9
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.8e-09 66.6 100 43.0
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 4.1e-08 62.8 41 65.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.5e-07 59.3 37 70.3
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 8.5e-06 55.1 51 54.9


User provided reference genes

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