Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 0.0e+00 1192.9 631 100.0
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 0.0e+00 1153.3 633 97.3
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 0.0e+00 1118.2 632 94.5
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 0.0e+00 1117.4 632 94.8
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 0.0e+00 1116.3 632 94.1
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.0e-291 1005.4 658 81.0
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 1.1e-286 989.6 658 79.9
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 4.2e-281 971.1 657 77.9
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 2.8e-277 958.4 656 80.0
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 4.8e-277 957.6 658 79.9
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.4e-273 946.0 664 77.1
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.8e-260 902.5 660 74.5
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 3.6e-216 755.4 694 62.1
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.6e-198 696.0 694 60.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 7.5e-198 694.5 681 61.1
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.2e-197 693.0 696 56.9
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.9e-197 692.6 706 57.9
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 8.3e-197 691.0 699 57.1
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.6e-195 686.8 697 58.8
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 3.5e-195 685.6 673 58.4
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 8.6e-194 681.0 697 58.5
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.6e-193 678.3 684 58.3
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.7e-192 675.2 690 55.8
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 5.2e-191 671.8 692 55.2
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 6.8e-191 671.4 702 57.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.2e-190 670.6 693 57.1
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.2e-189 666.4 708 56.2
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 4.9e-189 665.2 690 55.4
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 8.3e-189 664.5 711 56.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 8.3e-189 664.5 693 56.0
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.1e-188 664.1 710 56.3
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.2e-188 662.5 680 57.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 7.8e-187 657.9 692 57.8
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.0e-186 657.5 706 56.9
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.1e-186 655.2 706 55.1
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 6.6e-186 654.8 704 54.3
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 6.6e-186 654.8 689 58.1
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.5e-185 653.7 694 56.6
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 7.3e-185 651.4 718 53.8
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.2e-184 650.6 693 54.4
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 2.8e-184 649.4 692 54.5
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 3.6e-184 649.0 677 54.7
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 4.7e-184 648.7 705 54.5
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.4e-183 647.1 701 54.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.8e-183 646.7 706 53.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.3e-183 646.4 709 52.6
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 4.0e-183 645.6 706 54.0
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 5.2e-183 645.2 705 53.6
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.2e-182 644.0 624 59.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.4e-182 642.1 717 52.9
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 5.8e-182 641.7 697 53.1
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 7.5e-182 641.3 713 55.5
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 9.9e-182 641.0 690 54.3
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.7e-181 640.2 700 55.3
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 4.9e-181 638.6 709 53.5
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.4e-180 637.1 700 54.0
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.1e-179 633.3 697 55.5
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.1e-179 633.3 715 52.9
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.7e-179 632.9 693 57.9
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 4.6e-179 632.1 723 55.9
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.0e-178 629.4 700 53.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.9e-178 629.0 693 53.4
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 5.1e-178 628.6 689 56.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.6e-176 623.6 662 57.4
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.8e-176 622.9 688 54.9
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.1e-175 619.4 713 52.2
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 8.9e-175 617.8 695 57.1
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 3.4e-174 615.9 721 51.7
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 4.4e-174 615.5 677 55.4
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 5.8e-174 615.1 696 52.9
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 7.6e-174 614.8 732 51.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.8e-173 612.5 626 55.8
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.9e-173 612.1 678 56.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.2e-172 609.4 693 53.7
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.4e-172 608.6 659 54.8
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 2.7e-171 606.3 677 54.7
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 4.6e-171 605.5 679 55.2
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.3e-170 603.2 709 50.9
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.1e-167 594.3 660 54.8
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 9.0e-167 591.3 691 54.6
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.3e-165 587.4 675 54.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.8e-165 585.9 698 52.0
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 2.4e-164 583.2 702 49.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.4e-164 583.2 701 50.8
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.7e-162 577.0 705 49.1
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 8.7e-162 574.7 585 56.9
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 2.1e-160 570.1 712 52.8
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 6.2e-160 568.5 663 52.8
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 9.0e-159 564.7 667 52.5
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.5e-158 563.9 689 52.1
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 7.6e-158 561.6 544 57.0
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.1e-156 557.8 634 53.8
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 4.6e-155 552.4 677 52.1
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.8e-154 550.4 709 49.4
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 3.9e-154 549.3 582 55.3
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.7e-154 548.5 552 55.1
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.1e-153 547.7 558 55.4
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 2.8e-152 543.1 610 56.2
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.3e-151 538.9 707 50.4
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.7e-147 526.6 528 55.5
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.7e-146 521.5 744 48.1
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.9e-143 511.9 531 54.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.9e-141 506.5 530 54.7
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.5e-137 493.4 539 56.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.5e-134 482.6 679 44.2
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 6.5e-133 478.8 543 52.1
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.4e-126 456.4 468 54.9
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 5.9e-126 455.7 667 44.8
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 4.5e-118 429.5 589 47.5
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 4.2e-116 422.9 439 56.3
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.1e-103 381.7 372 54.3
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 3.1e-103 380.2 528 44.7
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.4e-98 364.8 347 57.6
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 3.8e-93 346.7 311 60.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.8e-90 337.8 359 57.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 2.6e-89 334.0 319 55.5
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.7e-88 331.3 377 54.9
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 8.0e-83 312.4 820 31.7
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.9e-82 308.9 315 54.6
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.7e-80 304.7 834 31.5
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 1.8e-74 284.6 363 47.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.2e-67 261.9 329 56.5
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 7.8e-62 242.7 357 42.6
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.6e-59 233.8 320 53.8
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.4e-57 227.3 275 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 3.9e-53 213.8 414 37.0
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 3.4e-49 200.7 142 73.2
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 6.4e-48 196.4 261 51.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.1e-47 195.7 219 51.1
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.9e-39 168.3 241 45.6
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.2e-39 167.5 125 70.4
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 9.3e-39 166.0 179 48.0
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.5e-31 141.4 99 74.7
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 7.1e-31 139.8 133 57.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 5.3e-26 123.6 146 47.3
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.1e-23 115.9 414 26.3
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.4e-10 72.4 86 46.5
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.2e-09 69.3 146 41.8
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.8e-08 64.3 65 56.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.4e-07 62.4 52 53.8
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 1.9e-07 62.0 56 48.2
MELO3C009704.2 Cucumis melo HOM05D001562 ORTHO05D001437 5.5e-07 60.5 147 28.6
CsaV3_3G039620 Cucumis sativus L. HOM05D001562 ORTHO05D001437 5.5e-07 60.5 147 28.6
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.6e-06 58.9 51 49.0
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 6.1e-06 57.0 47 48.9


User provided reference genes

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