Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 8.7e-193 676.8 340 100.0
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 8.7e-193 676.8 340 100.0
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 3.4e-181 638.3 343 94.2
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 1.9e-179 632.5 343 93.3
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 3.2e-179 631.7 343 93.0
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 2.5e-171 605.5 345 89.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 2.2e-167 592.4 351 86.6
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 4.5e-165 584.7 351 84.9
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 2.2e-164 582.4 351 85.2
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 2.7e-162 575.5 350 83.4
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 3.4e-160 568.5 350 82.3
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 7.0e-158 560.8 351 83.2
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.3e-135 486.9 372 67.7
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 9.5e-131 470.7 339 70.5
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 2.1e-114 416.4 334 64.7
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.8e-113 413.3 342 63.2
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.5e-112 410.2 343 61.2
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.5e-112 410.2 344 61.9
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 3.4e-112 409.1 330 63.6
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 7.6e-112 407.9 344 61.6
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 2.9e-111 406.0 342 62.3
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 6.4e-111 404.8 290 67.9
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 6.4e-111 404.8 304 66.1
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 1.9e-110 403.3 343 60.3
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.0e-108 397.5 349 59.6
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 3.0e-108 396.0 341 59.2
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.9e-108 395.6 342 60.5
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 5.1e-108 395.2 323 63.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 8.7e-108 394.4 324 61.4
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 8.7e-108 394.4 340 59.4
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 2.5e-107 392.9 333 61.0
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 3.3e-107 392.5 302 65.6
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 4.3e-107 392.1 328 63.4
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 5.6e-107 391.7 407 53.6
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 9.6e-107 391.0 288 67.7
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.6e-106 390.2 346 57.8
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 2.8e-106 389.4 337 59.1
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 2.8e-106 389.4 341 58.7
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 3.6e-106 389.0 337 58.8
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 8.1e-106 387.9 344 59.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 1.8e-105 386.7 336 59.8
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.8e-105 386.7 288 67.4
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 2.4e-105 386.3 281 65.8
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 2.4e-105 386.3 320 63.4
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 3.1e-105 386.0 302 65.2
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 4.0e-105 385.6 302 65.2
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 4.0e-105 385.6 341 58.4
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 4.0e-105 385.6 318 61.0
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 5.3e-105 385.2 281 66.2
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 6.9e-105 384.8 361 57.6
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 2.0e-104 383.3 333 61.3
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.0e-104 383.3 306 61.8
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 3.4e-104 382.5 281 64.4
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 5.8e-104 381.7 333 61.3
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 3.8e-103 379.0 324 59.9
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 8.4e-103 377.9 336 58.3
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 8.4e-103 377.9 341 57.2
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 3.2e-102 375.9 293 66.6
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 5.4e-102 375.2 281 64.8
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.0e-100 370.9 369 56.4
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.7e-100 370.2 281 64.1
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 1.1e-99 367.5 281 65.8
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.5e-99 367.1 281 65.1
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 4.3e-99 365.5 281 63.3
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 2.8e-98 362.8 288 62.5
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 6.2e-98 361.7 289 62.6
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 2.4e-97 359.8 325 60.3
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 3.1e-97 359.4 354 54.5
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 9.0e-97 357.8 289 62.3
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.5e-96 357.1 286 62.2
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 3.4e-96 355.9 332 55.1
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 5.8e-96 355.1 300 60.7
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 9.9e-96 354.4 289 61.2
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 3.2e-94 349.4 287 58.9
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 4.2e-94 349.0 289 61.6
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 2.7e-93 346.3 291 60.5
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.0e-92 344.4 345 53.3
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 1.1e-91 340.9 346 53.8
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 2.1e-90 336.7 311 57.2
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 8.1e-90 334.7 318 55.3
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.4e-89 334.0 333 54.1
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 2.1e-85 320.1 281 59.8
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 1.5e-83 313.9 245 64.9
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 1.6e-82 310.5 247 63.2
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.4e-81 306.6 331 51.4
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 2.4e-81 306.6 291 55.0
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 1.2e-80 304.3 284 55.6
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-77 293.1 242 61.6
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.3e-74 284.3 308 51.6
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 1.8e-73 280.4 198 69.2
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 6.9e-73 278.5 296 48.6
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.5e-72 277.3 296 52.7
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 8.5e-71 271.6 304 46.4
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.1e-69 266.9 305 50.5
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 3.0e-68 263.1 264 52.7
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 1.3e-66 257.7 350 45.7
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 6.9e-65 251.9 302 45.4
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.1e-54 218.0 223 48.4
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.8e-52 210.7 146 67.1
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 2.0e-48 197.2 158 63.9
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.3e-47 194.5 335 38.5
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 2.9e-47 193.4 217 52.5
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 6.5e-47 192.2 136 64.7
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 7.0e-41 172.2 382 33.0
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 3.0e-36 156.8 298 35.9
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.8e-33 147.5 163 47.2
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.4e-25 121.3 147 44.2
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 2.1e-21 107.5 70 70.0
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 3.6e-21 106.7 122 47.5
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.4e-17 94.0 102 50.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.4e-12 78.2 166 34.3
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 3.5e-08 63.5 239 27.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.3e-07 61.6 197 31.5
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 2.3e-07 60.8 159 33.3
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 3.0e-07 60.5 216 30.1
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 5.1e-07 59.7 166 31.3
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 5.1e-07 59.7 166 31.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 5.1e-07 59.7 166 31.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.5e-06 58.2 209 27.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.5e-06 58.2 151 32.5
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.5e-06 57.4 61 49.2
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.5e-06 57.4 61 49.2
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.5e-06 57.4 147 28.6
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 2.5e-06 57.4 179 30.2
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 3.3e-06 57.0 163 32.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.6e-06 56.2 144 25.7
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 7.3e-06 55.8 131 32.8
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 9.5e-06 55.5 179 30.2


User provided reference genes

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