Step 1:

OPTION 1: one or more query genes

  • Paste a list of AGI codes in the text area on the left
  • The AGI codes may be seperated by tabs, spaces, semicolon, commas and newlines
  • The AGI codes are case insensitive
  • e.g.
    at1G01010;AT1G01030;at1g01040
    AT3G48750
    at5g61850;at1g77950

Step 3:

Show:

Pairwise interactions
Interactions of query protein(s) with neighbours
     Interactions between neighbours

Output:

Cytoscape (starts automatically ?)
Text

Step 2:

Select regulatory interactions database(s):

AGRIS : confirmed unconfirmed both
microarray gene-target relations : confirmed unconfirmed both
EVEX regulation : confirmed unconfirmed both
EVEX indirect regulation : confirmed unconfirmed both
Chip-Seq : confirmed unconfirmed both
Please allow pop-ups. Also add: co-expression analysis or protein-protein interactions to the network Show localization of genes