Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- SL04G063380
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G77000 | RNI-like superfamily protein SKP2B; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G21410.1); Has 9510 Blast hits to 4016 proteins in 276 species: Archae - 0; Bacteria - 549; Metazoa - 3688; Fungi - 1101; Plants - 3231; Viruses - 6; Other Eukaryotes - 935 (source: NCBI BLink). AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor. | 1 | + | View |
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD2G56920 | No description available. | Bd2 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00026G00750 | No description available. | supercontig_26 | + | View |
Oryza sativa ssp. indica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OSINDICA_01G62560 | No description available. | Chr01 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT05G18570 | No description available. | Chr05 | + | View |
| PT02G07470 | No description available. | Chr02 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB09G020840 | No description available. | chr_9 | + | View |
Setaria italica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SI003G23970 | No description available. | scaffold_3 | - | View |
| SI005G41420 | No description available. | scaffold_5 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV18G11240 | name=GSVIVG01009981001; | chr18 | + | View |