PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 9.4
Description: mitochondrial electron transport / ATP synthesis.alternative oxidase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_379	2	2	0.000595203
Brachypodium distachyon	Bd5	17	CH_bdi_75	3	3	0.0000000341179
Populus trichocarpa	Chr12	17	CH_ptr_412	2	2	0.000299888
Setaria italica	scaffold_7	17	CH_sit_137	3	3	0.0000000192074
Solanum lycopersicum	ch08	17	CH_sly_414	2	2	0.000345552
Vitis vinifera	chr2	17	CH_vvi_422	2	3	0.000684523
Zea mays	2	17	CH_zma_43	3	3	0.00000000711105

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V