PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.99
Description: signalling.receptor kinases.misc

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_281	4	5	0.0000483319
Arabidopsis thaliana	1	17	CH_ath_24	11	14	5.31813e-20
Arabidopsis thaliana	3	17	CH_ath_6	18	25	7.23477e-34
Arabidopsis thaliana	4	17	CH_ath_10	14	14	8.17006e-30
Arabidopsis thaliana	1	18	CH_ath_26	11	14	5.31813e-20
Arabidopsis thaliana	3	18	CH_ath_17	18	25	7.23477e-34
Arabidopsis thaliana	4	18	CH_ath_21	14	14	8.17006e-30
Brachypodium distachyon	Bd2	17	CH_bdi_84	5	7	0.0000000660359
Brachypodium distachyon	Bd4	17	CH_bdi_25	7	8	0.000000000000153784
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_69	2	2	0.000682555
Oryza sativa ssp. japonica	1	17	CH_osa_368	4	4	0.000216708
Oryza sativa ssp. japonica	1	17	CH_osa_273	7	23	0.0000228703
Oryza sativa ssp. japonica	11	17	CH_osa_31	12	18	5.21236e-17
Oryza sativa ssp. japonica	11	17	CH_osa_38	13	33	0.0000000000000112155
Oryza sativa ssp. japonica	5	17	CH_osa_58	8	9	0.00000000000725438
Oryza sativa ssp. japonica	6	17	CH_osa_223	10	62	0.00000364683
Oryza sativa ssp. japonica	8	17	CH_osa_55	11	27	0.00000000000441381
Oryza sativa ssp. japonica	9	17	CH_osa_23	19	75	8.62236e-19
Oryza sativa ssp. japonica	9	17	CH_osa_203	5	5	0.0000017011
Oryza sativa ssp. japonica	11	18	CH_osa_25	12	18	5.21236e-17
Oryza sativa ssp. japonica	11	18	CH_osa_29	13	33	0.0000000000000112155
Oryza sativa ssp. japonica	4	18	CH_osa_118	15	277	0.000454812
Oryza sativa ssp. japonica	6	18	CH_osa_75	10	62	0.00000364683
Oryza sativa ssp. japonica	8	18	CH_osa_39	11	27	0.00000000000441381
Oryza sativa ssp. japonica	9	18	CH_osa_11	26	102	4.51765e-27
Oryza sativa ssp. japonica	8	19	CH_osa_41	4	7	0.000645151
Oryza sativa ssp. japonica	4	20	CH_osa_35	12	274	0.000183386
Populus trichocarpa	Chr07	17	CH_ptr_92	6	6	0.00000000000354489
Populus trichocarpa	Chr13	17	CH_ptr_351	4	8	0.0000579762
Populus trichocarpa	Chr17	17	CH_ptr_181	5	7	0.0000000361977
Populus trichocarpa	Chr19	17	CH_ptr_123	7	18	0.000000000223969
Populus trichocarpa	Chr19	17	CH_ptr_182	5	7	0.0000000361977
Populus trichocarpa	Chr19	18	CH_ptr_69	12	170	0.000000000125082
Setaria italica	scaffold_2	17	CH_sit_218	4	5	0.00000295254
Setaria italica	scaffold_3	17	CH_sit_65	7	11	0.00000000000138035
Vitis vinifera	chr9	17	CH_vvi_5	19	34	1.13309e-39
Vitis vinifera	chr9	18	CH_vvi_5	19	34	1.13309e-39
Vitis vinifera	chr9	19	CH_vvi_21	3	3	0.0000519333
Zea mays	7	17	CH_zma_190	3	4	0.000326199

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V