PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.25
Description: signalling.receptor kinases.wall associated kinase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_70	6	8	0.0000000000000832848
Arabidopsis thaliana	1	17	CH_ath_56	6	6	0.00000000000000297752
Brachypodium distachyon	Bd3	17	CH_bdi_244	3	3	0.000508698
Brachypodium distachyon	Bd3	17	CH_bdi_44	6	7	0.0000000000598861
Brachypodium distachyon	Bd5	17	CH_bdi_39	10	63	0.0000000000341888
Brachypodium distachyon	Bd5	18	CH_bdi_18	10	63	0.0000000000341888
Brachypodium distachyon	Bd5	19	CH_bdi_12	4	8	0.0000110594
Oryza sativa ssp. japonica	4	19	CH_osa_13	4	24	0.00000566289
Populus trichocarpa	Chr01	17	CH_ptr_14	14	29	2.31267e-32
Populus trichocarpa	Chr09	17	CH_ptr_425	4	28	0.000395436
Populus trichocarpa	Chr01	18	CH_ptr_12	14	29	2.31267e-32
Populus trichocarpa	Chr01	19	CH_ptr_3	5	28	0.0000000391511
Setaria italica	scaffold_1	17	CH_sit_61	7	8	0.000000000000380892
Setaria italica	scaffold_2	17	CH_sit_438	3	3	0.000824479
Setaria italica	scaffold_3	17	CH_sit_439	3	3	0.000824479
Setaria italica	scaffold_6	17	CH_sit_67	7	9	0.00000000000170994
Setaria italica	scaffold_7	17	CH_sit_133	6	12	0.0000000160072
Setaria italica	scaffold_8	17	CH_sit_175	7	36	0.000000371796
Setaria italica	scaffold_8	17	CH_sit_171	5	8	0.000000356054
Setaria italica	scaffold_8	17	CH_sit_123	5	5	0.00000000640248
Setaria italica	scaffold_1	18	CH_sit_55	10	155	0.00000103982
Setaria italica	scaffold_6	18	CH_sit_49	10	136	0.000000282102
Setaria italica	scaffold_8	18	CH_sit_54	12	267	0.000000698524
Setaria italica	scaffold_8	19	CH_sit_20	3	4	0.000656465
Solanum lycopersicum	ch09	17	CH_sly_207	5	47	0.000000772973
Solanum lycopersicum	ch09	19	CH_sly_8	3	3	0.00000226381
Vitis vinifera	chr10	17	CH_vvi_44	8	15	1.45961e-17
Vitis vinifera	chr3	17	CH_vvi_164	4	5	0.0000000584227
Vitis vinifera	chr3	19	CH_vvi_19	3	5	0.000048561
Zea mays	2	17	CH_zma_193	5	78	0.000332469
Zea mays	6	17	CH_zma_61	4	5	0.000000100184

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V