PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2
Description: signalling.receptor kinases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_74	13	24	0.000000000000309201
Arabidopsis thaliana	4	17	CH_ath_189	6	6	0.000000575757
Arabidopsis thaliana	3	18	CH_ath_38	13	24	0.000000000000309201
Brachypodium distachyon	Bd4	17	CH_bdi_20	14	18	0.00000000000000964261
Brachypodium distachyon	Bd2	18	CH_bdi_15	11	12	0.0000000000020396
Brachypodium distachyon	Bd4	18	CH_bdi_12	14	18	0.00000000000000964261
Brachypodium distachyon	Bd4	18	CH_bdi_35	10	25	0.0000143657
Chlamydomonas reinhardtii	chromosome_17	17	CH_cre_13	5	7	0.00000000312599
Oryza sativa ssp. japonica	1	17	CH_osa_186	10	15	0.00000082031
Oryza sativa ssp. japonica	11	17	CH_osa_166	18	60	0.0000002615
Oryza sativa ssp. japonica	4	17	CH_osa_82	19	49	0.000000000307068
Oryza sativa ssp. japonica	11	18	CH_osa_53	23	95	0.0000000448829
Oryza sativa ssp. japonica	4	18	CH_osa_45	19	49	0.000000000307068
Populus trichocarpa	Chr01	17	CH_ptr_55	13	13	0.00000000000000134249
Populus trichocarpa	Chr03	17	CH_ptr_253	14	44	0.00000198938
Populus trichocarpa	Chr11	17	CH_ptr_58	14	16	0.00000000000000479451
Populus trichocarpa	Chr17	17	CH_ptr_167	9	10	0.0000000129834
Populus trichocarpa	Chr19	17	CH_ptr_51	23	53	3.21036e-16
Populus trichocarpa	scaffold_24	17	CH_ptr_20	22	25	8.60567e-26
Populus trichocarpa	scaffold_67	17	CH_ptr_145	10	12	0.00000000263695
Populus trichocarpa	Chr01	18	CH_ptr_47	13	13	0.00000000000000134249
Populus trichocarpa	Chr03	18	CH_ptr_87	14	44	0.00000198938
Populus trichocarpa	Chr07	18	CH_ptr_77	10	13	0.0000000110977
Populus trichocarpa	Chr11	18	CH_ptr_1	83	120	7.80941e-91
Populus trichocarpa	Chr11	18	CH_ptr_113	29	267	0.000453604
Populus trichocarpa	Chr11	18	CH_ptr_48	14	16	0.00000000000000479451
Populus trichocarpa	Chr17	18	CH_ptr_78	11	17	0.0000000139138
Populus trichocarpa	Chr19	18	CH_ptr_105	12	38	0.0000532573
Populus trichocarpa	Chr19	18	CH_ptr_45	23	53	3.21036e-16
Populus trichocarpa	scaffold_24	18	CH_ptr_18	22	25	8.60567e-26
Populus trichocarpa	scaffold_67	18	CH_ptr_74	10	12	0.00000000263695
Populus trichocarpa	Chr19	19	CH_ptr_12	5	6	0.000274129
Setaria italica	scaffold_4	17	CH_sit_319	12	49	0.0000575525
Setaria italica	scaffold_5	17	CH_sit_93	10	12	0.000000000155809
Setaria italica	scaffold_4	18	CH_sit_71	12	49	0.0000575525
Setaria italica	scaffold_5	18	CH_sit_42	10	12	0.000000000155809
Setaria italica	scaffold_5	18	CH_sit_27	33	146	4.95172e-18
Setaria italica	scaffold_8	18	CH_sit_72	27	282	0.0000664322
Setaria italica	scaffold_8	18	CH_sit_67	28	289	0.0000255289
Solanum lycopersicum	ch02	17	CH_sly_132	16	68	0.0000000106008
Solanum lycopersicum	ch07	17	CH_sly_455	5	6	0.000643916
Solanum lycopersicum	ch02	18	CH_sly_59	16	68	0.0000000106008
Solanum lycopersicum	ch07	20	CH_sly_18	10	39	0.0000106099
Vitis vinifera	chr10	17	CH_vvi_31	17	18	1.83989e-21
Vitis vinifera	chr16	17	CH_vvi_168	14	41	0.0000000852422
Vitis vinifera	chr19	17	CH_vvi_43	20	34	2.12251e-18
Vitis vinifera	chrUn	17	CH_vvi_263	6	6	0.0000132295
Vitis vinifera	chrUn	17	CH_vvi_296	7	10	0.0000413625
Vitis vinifera	chr10	18	CH_vvi_31	17	18	1.83989e-21
Vitis vinifera	chr10	18	CH_vvi_72	14	42	0.000000124551
Vitis vinifera	chr12	18	CH_vvi_68	10	16	0.0000000559349
Vitis vinifera	chr12	18	CH_vvi_87	31	284	0.00000416789
Vitis vinifera	chr12	18	CH_vvi_73	10	17	0.000000132392
Vitis vinifera	chr16	18	CH_vvi_69	14	41	0.0000000852422
Vitis vinifera	chr16	18	CH_vvi_84	30	250	0.000000786472
Vitis vinifera	chr19	18	CH_vvi_35	20	34	2.12251e-18
Zea mays	3	18	CH_zma_27	10	43	0.0000167451

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V