PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.5
Description: protein.degradation.serine protease

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_144	5	5	0.0000000195152
Arabidopsis thaliana	2	17	CH_ath_99	6	6	0.0000000000679587
Arabidopsis thaliana	3	17	CH_ath_267	4	5	0.0000277046
Brachypodium distachyon	Bd4	17	CH_bdi_148	5	8	0.00000792513
Brachypodium distachyon	Bd4	17	CH_bdi_172	4	4	0.0000260638
Brachypodium distachyon	Bd4	18	CH_bdi_25	16	278	0.000000141107
Chlamydomonas reinhardtii	chromosome_10	17	CH_cre_62	3	3	0.000429023
Chlamydomonas reinhardtii	chromosome_10	19	CH_cre_22	3	3	0.000429023
Oryza sativa ssp. japonica	11	17	CH_osa_204	6	27	0.00000195802
Oryza sativa ssp. japonica	11	17	CH_osa_239	7	62	0.00000660999
Oryza sativa ssp. japonica	3	17	CH_osa_403	3	3	0.000642404
Oryza sativa ssp. japonica	11	18	CH_osa_56	11	207	0.00000011897
Populus trichocarpa	Chr01	17	CH_ptr_111	7	11	0.0000000000526029
Populus trichocarpa	Chr16	17	CH_ptr_126	6	7	0.000000000351742
Populus trichocarpa	Chr16	19	CH_ptr_10	4	7	0.0000780145
Setaria italica	scaffold_2	17	CH_sit_89	6	6	0.000000000112116
Setaria italica	scaffold_5	17	CH_sit_295	4	5	0.0000391757
Setaria italica	scaffold_7	17	CH_sit_454	4	9	0.000975197
Solanum lycopersicum	ch01	17	CH_sly_139	5	5	0.0000000178314
Solanum lycopersicum	ch04	17	CH_sly_41	12	47	0.00000000000000366669
Solanum lycopersicum	ch04	17	CH_sly_299	4	5	0.0000259437
Solanum lycopersicum	ch06	17	CH_sly_251	4	4	0.00000520316
Solanum lycopersicum	ch10	17	CH_sly_210	5	8	0.000000990011
Solanum lycopersicum	ch12	17	CH_sly_252	4	4	0.00000520316
Solanum lycopersicum	ch04	18	CH_sly_33	12	47	0.00000000000000366669
Solanum lycopersicum	ch12	19	CH_sly_7	4	4	0.00000100242
Vitis vinifera	chr3	17	CH_vvi_72	9	16	0.0000000000000636807
Vitis vinifera	chr8	17	CH_vvi_140	6	9	0.00000000861318
Vitis vinifera	chr3	18	CH_vvi_46	10	27	0.000000000000169229
Zea mays	2	17	CH_zma_229	3	3	0.000835406
Zea mays	7	17	CH_zma_111	4	5	0.0000124812

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V