PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.21
Description: RNA.regulation of transcription.GRAS transcription factor family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd4	17	CH_bdi_24	7	10	0.000000000000148683
Oryza sativa ssp. japonica	11	17	CH_osa_115	4	4	0.00000000813693
Populus trichocarpa	Chr01	17	CH_ptr_138	5	5	0.00000000194305
Populus trichocarpa	Chr09	17	CH_ptr_188	5	7	0.0000000406593
Populus trichocarpa	Chr10	17	CH_ptr_164	5	6	0.0000000116376
Setaria italica	scaffold_3	17	CH_sit_346	3	3	0.000156104
Setaria italica	scaffold_7	17	CH_sit_348	3	3	0.000156104
Setaria italica	scaffold_8	17	CH_sit_347	3	3	0.000156104
Vitis vinifera	chr13	17	CH_vvi_175	4	4	0.000000133712
Vitis vinifera	chr6	17	CH_vvi_120	5	6	0.00000000112773

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V