PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.7
Description: misc.oxidases - copper, flavone etc

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_352	4	8	0.000272193
Arabidopsis thaliana	1	17	CH_ath_124	6	9	0.00000000335107
Arabidopsis thaliana	5	17	CH_ath_136	5	5	0.0000000126299
Arabidopsis thaliana	1	18	CH_ath_47	11	104	0.00000000196671
Brachypodium distachyon	Bd1	17	CH_bdi_86	5	6	0.000000093511
Brachypodium distachyon	Bd4	17	CH_bdi_68	5	5	0.0000000156309
Oryza sativa ssp. japonica	12	17	CH_osa_221	5	12	0.00000322873
Oryza sativa ssp. japonica	3	17	CH_osa_79	7	16	0.000000000246248
Oryza sativa ssp. japonica	4	17	CH_osa_422	5	32	0.000789622
Oryza sativa ssp. japonica	6	17	CH_osa_420	3	3	0.000755534
Oryza sativa ssp. japonica	7	17	CH_osa_248	4	5	0.0000088522
Oryza sativa ssp. japonica	3	18	CH_osa_51	10	110	0.00000000965307
Populus trichocarpa	Chr07	17	CH_ptr_357	5	15	0.0000806674
Populus trichocarpa	Chr10	17	CH_ptr_297	4	4	0.00000758963
Populus trichocarpa	Chr17	17	CH_ptr_75	11	38	0.0000000000000623523
Populus trichocarpa	Chr19	17	CH_ptr_82	7	7	0.000000000000361215
Populus trichocarpa	Chr17	18	CH_ptr_57	11	38	0.0000000000000623523
Setaria italica	scaffold_1	17	CH_sit_434	4	10	0.000698289
Setaria italica	scaffold_2	17	CH_sit_277	4	5	0.000016833
Setaria italica	scaffold_9	17	CH_sit_222	4	4	0.00000337494
Solanum lycopersicum	ch01	17	CH_sly_318	4	5	0.0000477059
Solanum lycopersicum	ch05	17	CH_sly_290	6	24	0.0000192747
Solanum lycopersicum	ch05	17	CH_sly_120	6	8	0.00000000423491
Solanum lycopersicum	ch09	17	CH_sly_268	4	4	0.0000095721
Vitis vinifera	chr2	17	CH_vvi_258	4	4	0.00000945407
Vitis vinifera	chr3	17	CH_vvi_110	6	6	0.000000000170044
Vitis vinifera	chr5	17	CH_vvi_380	4	7	0.000327484
Vitis vinifera	chr5	17	CH_vvi_67	9	14	0.0000000000000238201
Vitis vinifera	chrUn	17	CH_vvi_257	4	4	0.00000945407
Vitis vinifera	chr3	18	CH_vvi_74	10	90	0.00000020974
Zea mays	5	17	CH_zma_230	3	3	0.000893006
Zea mays	7	17	CH_zma_94	4	4	0.00000273626

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V