PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 26.4.1
Description: misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_342	3	4	0.000209836
Arabidopsis thaliana	5	17	CH_ath_381	4	24	0.000603555
Brachypodium distachyon	Bd2	17	CH_bdi_220	3	3	0.000236437
Brachypodium distachyon	Bd2	17	CH_bdi_66	6	16	0.0000000140339
Oryza sativa ssp. japonica	1	17	CH_osa_10	16	54	5.16042e-30
Oryza sativa ssp. japonica	7	17	CH_osa_222	5	22	0.00000360324
Oryza sativa ssp. japonica	1	18	CH_osa_10	16	54	5.16042e-30
Populus trichocarpa	Chr14	17	CH_ptr_16	16	32	4.75234e-31
Populus trichocarpa	Chr14	18	CH_ptr_14	16	32	4.75234e-31
Setaria italica	scaffold_5	17	CH_sit_135	5	8	0.0000000163822
Setaria italica	scaffold_5	17	CH_sit_75	7	18	0.0000000000188151
Solanum lycopersicum	ch01	17	CH_sly_491	3	5	0.000914797
Vitis vinifera	chr6	17	CH_vvi_321	3	3	0.0000857455
Vitis vinifera	chr8	17	CH_vvi_96	6	8	0.00000000000614503
Vitis vinifera	chr8	19	CH_vvi_29	3	4	0.000226992
Zea mays	3	17	CH_zma_84	4	6	0.00000133969

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V