PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.21
Description: misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_251	4	5	0.0000156751
Arabidopsis thaliana	4	17	CH_ath_35	9	10	7.31891e-18
Arabidopsis thaliana	4	17	CH_ath_31	12	27	2.86227e-19
Arabidopsis thaliana	5	17	CH_ath_173	5	7	0.000000199342
Arabidopsis thaliana	4	18	CH_ath_34	10	26	0.0000000000000107908
Arabidopsis thaliana	4	18	CH_ath_29	12	27	2.86227e-19
Arabidopsis thaliana	4	19	CH_ath_80	5	22	0.0000415234
Brachypodium distachyon	Bd1	17	CH_bdi_203	3	3	0.000105262
Brachypodium distachyon	Bd1	17	CH_bdi_108	4	5	0.000000792839
Brachypodium distachyon	Bd2	17	CH_bdi_202	3	3	0.000105262
Oryza sativa ssp. japonica	10	17	CH_osa_132	4	5	0.0000000320168
Oryza sativa ssp. japonica	10	17	CH_osa_150	4	6	0.0000000960072
Oryza sativa ssp. japonica	4	17	CH_osa_256	3	3	0.000011531
Oryza sativa ssp. japonica	7	17	CH_osa_236	4	14	0.00000638395
Populus trichocarpa	Chr01	17	CH_ptr_418	3	4	0.000330947
Populus trichocarpa	Chr02	17	CH_ptr_205	4	4	0.000000101415
Populus trichocarpa	Chr10	17	CH_ptr_483	3	5	0.000826588
Setaria italica	scaffold_2	17	CH_sit_297	4	10	0.0000416105
Setaria italica	scaffold_3	17	CH_sit_188	4	5	0.000000996717
Setaria italica	scaffold_7	17	CH_sit_189	4	5	0.000000996717
Setaria italica	scaffold_7	17	CH_sit_342	3	3	0.000133107
Setaria italica	scaffold_9	17	CH_sit_219	4	6	0.00000298655
Solanum lycopersicum	ch03	17	CH_sly_17	9	11	2.86662e-20
Solanum lycopersicum	ch09	17	CH_sly_347	3	3	0.000103613
Solanum lycopersicum	ch03	18	CH_sly_63	10	222	0.0000000326114
Vitis vinifera	chr2	17	CH_vvi_295	3	4	0.0000395542
Vitis vinifera	chr5	17	CH_vvi_259	3	3	0.00000989371
Zea mays	10	17	CH_zma_88	4	6	0.00000180878
Zea mays	UNKNOWN	17	CH_zma_25	5	5	0.000000000162275

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V