PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.10
Description: misc.cytochrome P450

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_125	7	10	0.00000000409403
Arabidopsis thaliana	2	17	CH_ath_278	5	8	0.0000373137
Arabidopsis thaliana	3	17	CH_ath_85	8	9	0.00000000000221177
Arabidopsis thaliana	3	17	CH_ath_9	18	23	2.12093e-30
Arabidopsis thaliana	3	17	CH_ath_44	10	11	1.35095e-16
Arabidopsis thaliana	3	17	CH_ath_152	6	7	0.0000000338572
Arabidopsis thaliana	3	17	CH_ath_306	4	4	0.0000941978
Arabidopsis thaliana	4	17	CH_ath_307	4	4	0.0000941978
Arabidopsis thaliana	4	17	CH_ath_88	9	14	0.00000000000339723
Arabidopsis thaliana	4	17	CH_ath_107	8	13	0.000000000308356
Arabidopsis thaliana	5	17	CH_ath_209	8	32	0.000002234
Arabidopsis thaliana	3	18	CH_ath_32	10	11	1.35095e-16
Arabidopsis thaliana	3	18	CH_ath_20	18	23	2.12093e-30
Arabidopsis thaliana	4	18	CH_ath_54	10	44	0.0000000246438
Arabidopsis thaliana	3	19	CH_ath_55	6	9	0.0000000243802
Arabidopsis thaliana	4	19	CH_ath_73	6	21	0.0000150409
Brachypodium distachyon	Bd1	17	CH_bdi_161	5	6	0.0000140185
Brachypodium distachyon	Bd2	17	CH_bdi_14	13	22	7.31979e-17
Brachypodium distachyon	Bd5	17	CH_bdi_46	8	10	0.0000000000926504
Brachypodium distachyon	Bd2	18	CH_bdi_11	13	22	7.31979e-17
Chlamydomonas reinhardtii	chromosome_10	17	CH_cre_16	6	20	0.0000000529873
Chlamydomonas reinhardtii	chromosome_16	17	CH_cre_51	3	3	0.000177414
Chlamydomonas reinhardtii	chromosome_7	17	CH_cre_52	3	3	0.000177414
Chlamydomonas reinhardtii	chromosome_9	17	CH_cre_33	4	7	0.0000126536
Chlamydomonas reinhardtii	chromosome_16	19	CH_cre_15	3	3	0.000116166
Chlamydomonas reinhardtii	chromosome_7	19	CH_cre_16	3	3	0.000116166
Chlamydomonas reinhardtii	chromosome_9	19	CH_cre_23	3	4	0.000464024
Oryza sativa ssp. japonica	1	17	CH_osa_111	7	11	0.00000000648089
Oryza sativa ssp. japonica	1	17	CH_osa_314	4	4	0.0000848984
Oryza sativa ssp. japonica	1	17	CH_osa_52	9	13	0.000000000000528873
Oryza sativa ssp. japonica	10	17	CH_osa_43	12	33	0.0000000000000539607
Oryza sativa ssp. japonica	2	17	CH_osa_13	14	21	7.00052e-22
Oryza sativa ssp. japonica	2	17	CH_osa_389	6	24	0.000398171
Oryza sativa ssp. japonica	2	17	CH_osa_313	4	4	0.0000848984
Oryza sativa ssp. japonica	3	17	CH_osa_219	5	6	0.00000314237
Oryza sativa ssp. japonica	3	17	CH_osa_312	4	4	0.0000848984
Oryza sativa ssp. japonica	6	17	CH_osa_12	14	20	2.34674e-22
Oryza sativa ssp. japonica	7	17	CH_osa_70	9	19	0.0000000000660994
Oryza sativa ssp. japonica	8	17	CH_osa_167	6	9	0.000000269103
Oryza sativa ssp. japonica	9	17	CH_osa_393	4	5	0.000422379
Oryza sativa ssp. japonica	2	18	CH_osa_15	14	21	7.00052e-22
Oryza sativa ssp. japonica	6	18	CH_osa_13	14	20	2.34674e-22
Oryza sativa ssp. japonica	10	19	CH_osa_3	9	33	0.000000000355925
Oryza sativa ssp. japonica	2	19	CH_osa_16	4	4	0.0000126446
Oryza sativa ssp. japonica	10	20	CH_osa_9	10	70	0.0000000121242
Populus trichocarpa	Chr01	17	CH_ptr_31	16	31	4.52166e-20
Populus trichocarpa	Chr01	17	CH_ptr_125	7	7	0.000000000299988
Populus trichocarpa	Chr02	17	CH_ptr_422	4	4	0.00034471
Populus trichocarpa	Chr02	17	CH_ptr_270	5	5	0.00000329961
Populus trichocarpa	Chr02	17	CH_ptr_225	7	13	0.00000048957
Populus trichocarpa	Chr05	17	CH_ptr_482	5	10	0.000798859
Populus trichocarpa	Chr06	17	CH_ptr_269	5	5	0.00000329961
Populus trichocarpa	Chr07	17	CH_ptr_42	17	54	5.42131e-17
Populus trichocarpa	Chr08	17	CH_ptr_423	6	17	0.000356191
Populus trichocarpa	Chr09	17	CH_ptr_267	7	16	0.00000318292
Populus trichocarpa	Chr10	17	CH_ptr_268	5	5	0.00000329961
Populus trichocarpa	Chr11	17	CH_ptr_48	14	30	2.50207e-16
Populus trichocarpa	Chr11	17	CH_ptr_421	4	4	0.00034471
Populus trichocarpa	Chr14	17	CH_ptr_119	9	15	0.000000000128325
Populus trichocarpa	Chr14	17	CH_ptr_49	10	10	2.55022e-16
Populus trichocarpa	Chr01	18	CH_ptr_29	16	31	4.52166e-20
Populus trichocarpa	Chr01	18	CH_ptr_97	11	79	0.0000120468
Populus trichocarpa	Chr07	18	CH_ptr_39	17	54	5.42131e-17
Populus trichocarpa	Chr11	18	CH_ptr_43	14	30	2.50207e-16
Populus trichocarpa	Chr14	18	CH_ptr_66	22	228	0.0000000000400776
Populus trichocarpa	Chr14	18	CH_ptr_44	10	10	2.55022e-16
Populus trichocarpa	Chr01	19	CH_ptr_13	5	13	0.000311032
Setaria italica	scaffold_1	17	CH_sit_407	5	9	0.000376393
Setaria italica	scaffold_2	17	CH_sit_167	6	7	0.000000206659
Setaria italica	scaffold_3	17	CH_sit_392	4	4	0.000318899
Setaria italica	scaffold_4	17	CH_sit_168	7	12	0.000000217417
Setaria italica	scaffold_4	17	CH_sit_215	6	9	0.00000243906
Setaria italica	scaffold_5	17	CH_sit_21	12	12	2.25769e-20
Setaria italica	scaffold_6	17	CH_sit_393	4	4	0.000318899
Setaria italica	scaffold_7	17	CH_sit_394	4	4	0.000318899
Setaria italica	scaffold_9	17	CH_sit_111	7	8	0.00000000227167
Setaria italica	scaffold_9	17	CH_sit_325	5	7	0.0000637563
Setaria italica	scaffold_9	17	CH_sit_172	11	58	0.000000359453
Setaria italica	scaffold_5	18	CH_sit_20	12	12	2.25769e-20
Setaria italica	scaffold_9	18	CH_sit_51	14	116	0.000000330749
Solanum lycopersicum	ch01	17	CH_sly_277	5	7	0.000013659
Solanum lycopersicum	ch03	17	CH_sly_32	10	10	1.12803e-17
Solanum lycopersicum	ch04	17	CH_sly_343	4	4	0.0000925338
Solanum lycopersicum	ch04	17	CH_sly_367	5	10	0.000161009
Solanum lycopersicum	ch06	17	CH_sly_206	5	5	0.000000658215
Solanum lycopersicum	ch07	17	CH_sly_33	10	10	1.12803e-17
Solanum lycopersicum	ch08	17	CH_sly_23	11	11	7.83036e-20
Solanum lycopersicum	ch09	17	CH_sly_79	7	7	0.0000000000329039
Solanum lycopersicum	ch10	17	CH_sly_244	5	6	0.00000392586
Solanum lycopersicum	ch03	18	CH_sly_26	10	10	1.12803e-17
Solanum lycopersicum	ch07	18	CH_sly_27	10	10	1.12803e-17
Solanum lycopersicum	ch08	18	CH_sly_20	11	11	7.83036e-20
Solanum lycopersicum	ch09	18	CH_sly_62	10	44	0.000000022549
Vitis vinifera	chr1	17	CH_vvi_407	4	4	0.000511346
Vitis vinifera	chr13	17	CH_vvi_220	6	8	0.00000191965
Vitis vinifera	chr15	17	CH_vvi_408	4	4	0.000511346
Vitis vinifera	chr15	17	CH_vvi_93	10	15	0.00000000000358774
Vitis vinifera	chr16	17	CH_vvi_152	7	9	0.0000000287184
Vitis vinifera	chr18	17	CH_vvi_221	6	8	0.00000191965
Vitis vinifera	chr18	17	CH_vvi_58	12	17	9.72273e-16
Vitis vinifera	chr18	17	CH_vvi_410	4	4	0.000511346
Vitis vinifera	chr19	17	CH_vvi_409	4	4	0.000511346
Vitis vinifera	chr19	17	CH_vvi_26	24	78	2.89611e-23
Vitis vinifera	chr3	17	CH_vvi_92	10	15	0.00000000000358774
Vitis vinifera	chr7	17	CH_vvi_45	12	14	1.47614e-17
Vitis vinifera	chr7	17	CH_vvi_405	4	4	0.000511346
Vitis vinifera	chr8	17	CH_vvi_406	4	4	0.000511346
Vitis vinifera	chr8	17	CH_vvi_136	7	8	0.00000000644756
Vitis vinifera	chr9	17	CH_vvi_293	5	6	0.0000355915
Vitis vinifera	chr15	18	CH_vvi_50	10	15	0.00000000000358774
Vitis vinifera	chr18	18	CH_vvi_42	12	17	9.72273e-16
Vitis vinifera	chr19	18	CH_vvi_28	24	78	2.89611e-23
Vitis vinifera	chr3	18	CH_vvi_49	10	15	0.00000000000358774
Vitis vinifera	chr7	18	CH_vvi_37	12	14	1.47614e-17
Vitis vinifera	chr18	19	CH_vvi_18	6	17	0.0000453763
Vitis vinifera	chr3	19	CH_vvi_14	6	14	0.0000112165
Vitis vinifera	chr7	19	CH_vvi_2	8	13	0.000000000248917
Vitis vinifera	chr8	19	CH_vvi_4	6	7	0.0000000273025
Vitis vinifera	chr9	19	CH_vvi_11	5	6	0.0000032557
Vitis vinifera	chr7	20	CH_vvi_4	13	183	0.0000300145
Zea mays	1	17	CH_zma_104	5	7	0.00000632502
Zea mays	3	17	CH_zma_66	6	9	0.000000157649

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V