PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 17.7.1.5
Description: hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	17	CH_bdi_119	3	3	0.00000187648
Oryza sativa ssp. japonica	6	17	CH_osa_28	6	9	2.34745e-17
Populus trichocarpa	Chr13	17	CH_ptr_110	4	4	0.0000000000472004
Setaria italica	scaffold_4	17	CH_sit_23	7	7	2.9565e-20
Setaria italica	scaffold_7	17	CH_sit_217	3	3	0.00000268904
Solanum lycopersicum	ch04	17	CH_sly_205	3	3	0.00000059705
Solanum lycopersicum	ch11	17	CH_sly_334	3	10	0.0000715557
Vitis vinifera	chr18	17	CH_vvi_36	7	8	4.0278e-20

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V