PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 17.2.3
Description: hormone metabolism.auxin.induced-regulated-responsive-activated

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_84	8	12	0.00000000000202418
Arabidopsis thaliana	1	17	CH_ath_215	5	8	0.00000298257
Arabidopsis thaliana	3	17	CH_ath_143	6	9	0.0000000191704
Arabidopsis thaliana	4	17	CH_ath_339	4	6	0.000185833
Arabidopsis thaliana	4	17	CH_ath_79	7	7	0.000000000000982173
Arabidopsis thaliana	5	17	CH_ath_194	5	7	0.00000112251
Arabidopsis thaliana	5	17	CH_ath_165	6	11	0.000000104663
Brachypodium distachyon	Bd4	17	CH_bdi_4	14	17	6.51353e-27
Brachypodium distachyon	Bd5	17	CH_bdi_150	4	4	0.00000889366
Brachypodium distachyon	Bd4	18	CH_bdi_4	14	17	6.51353e-27
Oryza sativa ssp. japonica	3	17	CH_osa_280	4	6	0.0000307357
Oryza sativa ssp. japonica	4	17	CH_osa_251	4	5	0.0000102653
Oryza sativa ssp. japonica	9	17	CH_osa_4	18	22	1.75209e-39
Oryza sativa ssp. japonica	9	18	CH_osa_4	18	22	1.75209e-39
Oryza sativa ssp. japonica	3	19	CH_osa_15	4	6	0.0000094999
Populus trichocarpa	Chr02	17	CH_ptr_327	4	4	0.000030066
Populus trichocarpa	Chr04	17	CH_ptr_10	19	21	1.89897e-37
Populus trichocarpa	Chr09	17	CH_ptr_326	4	4	0.000030066
Populus trichocarpa	Chr09	17	CH_ptr_18	15	19	6.21156e-27
Populus trichocarpa	Chr17	17	CH_ptr_325	4	4	0.000030066
Populus trichocarpa	Chr04	18	CH_ptr_8	19	21	1.89897e-37
Populus trichocarpa	Chr09	18	CH_ptr_16	15	19	6.21156e-27
Setaria italica	scaffold_2	17	CH_sit_4	18	24	9.75786e-34
Setaria italica	scaffold_7	17	CH_sit_125	6	8	0.00000000739729
Setaria italica	scaffold_9	17	CH_sit_368	4	6	0.00020749
Setaria italica	scaffold_2	18	CH_sit_4	18	24	9.75786e-34
Solanum lycopersicum	ch01	17	CH_sly_1	30	46	3.39163e-51
Solanum lycopersicum	ch04	17	CH_sly_45	10	15	0.00000000000000782824
Solanum lycopersicum	ch09	17	CH_sly_113	6	6	0.00000000198331
Solanum lycopersicum	ch10	17	CH_sly_73	7	7	0.0000000000121094
Solanum lycopersicum	ch10	17	CH_sly_467	4	6	0.000779144
Solanum lycopersicum	ch10	17	CH_sly_100	7	9	0.000000000431289
Solanum lycopersicum	ch11	17	CH_sly_16	11	11	1.60524e-20
Solanum lycopersicum	ch01	18	CH_sly_1	30	46	3.39163e-51
Solanum lycopersicum	ch04	18	CH_sly_36	10	15	0.00000000000000782824
Solanum lycopersicum	ch10	18	CH_sly_79	11	120	0.000010224
Solanum lycopersicum	ch11	18	CH_sly_16	11	11	1.60524e-20
Vitis vinifera	chr14	17	CH_vvi_86	8	11	0.00000000000101454
Vitis vinifera	chr3	17	CH_vvi_63	8	8	0.00000000000000622426
Vitis vinifera	chr3	17	CH_vvi_15	15	16	3.23122e-30
Vitis vinifera	chr4	17	CH_vvi_33	11	12	6.72873e-21
Vitis vinifera	chr5	17	CH_vvi_204	6	14	0.000000861676
Vitis vinifera	chr9	17	CH_vvi_402	4	7	0.000472192
Vitis vinifera	chr3	18	CH_vvi_16	15	16	3.23122e-30
Vitis vinifera	chr4	18	CH_vvi_32	11	12	6.72873e-21
Zea mays	1	17	CH_zma_50	5	5	0.000000030789
Zea mays	2	17	CH_zma_8	9	11	3.78574e-16
Zea mays	7	17	CH_zma_106	5	10	0.00000763146

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V