PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 16.8.3.1
Description: secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	17	CH_bdi_188	3	3	0.0000558254
Brachypodium distachyon	Bd1	17	CH_bdi_189	3	3	0.0000558254
Brachypodium distachyon	Bd2	17	CH_bdi_214	3	4	0.000223091
Brachypodium distachyon	Bd3	17	CH_bdi_186	3	3	0.0000558254
Brachypodium distachyon	Bd4	17	CH_bdi_187	3	3	0.0000558254
Brachypodium distachyon	Bd5	17	CH_bdi_215	3	4	0.000223091
Populus trichocarpa	Chr01	17	CH_ptr_33	9	15	5.64903e-19
Populus trichocarpa	Chr02	17	CH_ptr_45	7	7	1.055e-16
Populus trichocarpa	Chr09	17	CH_ptr_198	4	4	0.0000000793701
Setaria italica	scaffold_1	17	CH_sit_332	3	3	0.0000999987
Setaria italica	scaffold_2	17	CH_sit_49	8	18	0.0000000000000161195
Setaria italica	scaffold_4	17	CH_sit_95	5	5	0.000000000180568
Setaria italica	scaffold_5	17	CH_sit_333	3	3	0.0000999987
Vitis vinifera	chr13	17	CH_vvi_338	5	32	0.000126106
Vitis vinifera	chr13_random	17	CH_vvi_131	6	14	0.00000000346074
Vitis vinifera	chr15	17	CH_vvi_351	3	3	0.000191799
Vitis vinifera	chr15	17	CH_vvi_350	3	3	0.000191799
Vitis vinifera	chr18	17	CH_vvi_353	3	3	0.000191799
Vitis vinifera	chr18	17	CH_vvi_352	3	3	0.000191799
Zea mays	10	17	CH_zma_128	3	3	0.0000288709
Zea mays	7	17	CH_zma_45	5	12	0.0000000189268

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V