PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Musa acuminata	chr6	13	CH_mac_28	7	8	0.00000000000773028
Musa acuminata	chr6	14	CH_mac_11	10	203	0.000870201
Musa acuminata	chr2	15	CH_mac_7	4	5	0.0000245079
Oryza sativa ssp. japonica	10	13	CH_osa_317	6	13	0.000000159501
Oryza sativa ssp. japonica	2	13	CH_osa_715	6	38	0.000238506
Oryza sativa ssp. japonica	10	15	CH_osa_108	4	13	0.000788551
Populus trichocarpa	Chr02	13	CH_ptr_648	4	5	0.000270104
Populus trichocarpa	Chr12	13	CH_ptr_128	11	28	0.000000000000273371
Setaria italica	scaffold_2	13	CH_sit_562	4	5	0.00012371
Sorghum bicolor	chr_2	15	CH_sbi_9	5	14	0.0000332834
Vitis vinifera	chr13	13	CH_vvi_312	9	49	0.000000818747
Vitis vinifera	chr14	13	CH_vvi_567	4	5	0.000239702
Vitis vinifera	chr5	13	CH_vvi_587	5	13	0.000382072

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V