PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013227
Description: PAN-2 domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_108	6	15	0.000000000135641
Brachypodium distachyon	Bd2	13	CH_bdi_210	5	14	0.0000023485
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_381	4	4	0.000000358681
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_14	14	23	1.34357e-29
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_46	11	24	1.46988e-20
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_462	5	17	0.00000338622
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_86	8	11	3.1667e-16
Oryza sativa ssp. indica	Chr04	14	CH_osaindica_43	11	24	1.46988e-20
Oryza sativa ssp. indica	Chr04	14	CH_osaindica_14	14	23	1.34357e-29
Oryza sativa ssp. indica	Chr04	15	CH_osaindica_2	7	23	0.00000000000224
Oryza sativa ssp. japonica	1	13	CH_osa_840	3	4	0.000896401
Oryza sativa ssp. japonica	1	13	CH_osa_342	4	4	0.000000348263
Oryza sativa ssp. japonica	11	13	CH_osa_839	3	4	0.000896401
Oryza sativa ssp. japonica	4	13	CH_osa_28	12	22	4.88585e-24
Oryza sativa ssp. japonica	4	13	CH_osa_36	11	17	6.66772e-23
Oryza sativa ssp. japonica	5	13	CH_osa_654	5	34	0.000143266
Oryza sativa ssp. japonica	7	13	CH_osa_475	5	22	0.0000137688
Oryza sativa ssp. japonica	9	13	CH_osa_83	8	13	0.00000000000000229986
Oryza sativa ssp. japonica	4	14	CH_osa_34	11	17	6.66772e-23
Oryza sativa ssp. japonica	4	14	CH_osa_30	12	22	4.88585e-24
Oryza sativa ssp. japonica	11	15	CH_osa_72	3	4	0.000115895
Oryza sativa ssp. japonica	4	15	CH_osa_5	6	16	0.0000000000970229
Populus trichocarpa	Chr01	13	CH_ptr_14	25	52	1.49457e-42
Populus trichocarpa	Chr05	13	CH_ptr_442	7	38	0.0000055786
Populus trichocarpa	Chr11	13	CH_ptr_3	30	50	5.38822e-56
Populus trichocarpa	Chr11	13	CH_ptr_136	11	45	0.00000000000082932
Populus trichocarpa	Chr19	13	CH_ptr_308	6	12	0.000000117978
Populus trichocarpa	scaffold_29	13	CH_ptr_9	22	27	7.28228e-45
Populus trichocarpa	Chr01	14	CH_ptr_14	25	52	1.49457e-42
Populus trichocarpa	Chr11	14	CH_ptr_81	11	45	0.00000000000082932
Populus trichocarpa	scaffold_29	14	CH_ptr_9	22	27	7.28228e-45
Setaria italica	scaffold_2	13	CH_sit_122	7	14	0.00000000000533776
Setaria italica	scaffold_5	13	CH_sit_301	4	4	0.000000341537
Setaria italica	scaffold_7	13	CH_sit_10	15	22	7.06284e-33
Setaria italica	scaffold_7	14	CH_sit_10	15	22	7.06284e-33
Setaria italica	scaffold_2	15	CH_sit_4	5	14	0.000000112779
Setaria italica	scaffold_7	15	CH_sit_25	4	22	0.000392064
Solanum lycopersicum	ch02	13	CH_sly_43	10	19	1.04544e-19
Solanum lycopersicum	ch03	13	CH_sly_392	4	7	0.00000624986
Solanum lycopersicum	ch07	13	CH_sly_319	5	15	0.000000762725
Solanum lycopersicum	ch07	13	CH_sly_32	10	13	3.25961e-22
Solanum lycopersicum	ch10	13	CH_sly_705	3	4	0.000489358
Solanum lycopersicum	ch02	14	CH_sly_32	10	19	1.04544e-19
Solanum lycopersicum	ch07	14	CH_sly_27	10	13	3.25961e-22
Sorghum bicolor	chr_2	13	CH_sbi_128	7	16	0.0000000000333207
Sorghum bicolor	chr_2	15	CH_sbi_14	4	16	0.0000874441
Vitis vinifera	chr19	13	CH_vvi_7	23	52	2.24332e-42
Vitis vinifera	chr7	13	CH_vvi_128	8	20	0.0000000000070763
Vitis vinifera	chrUn	13	CH_vvi_642	3	3	0.00052775
Vitis vinifera	chrUn	13	CH_vvi_228	6	15	0.0000000452463
Vitis vinifera	chr19	14	CH_vvi_7	23	52	2.24332e-42
Vitis vinifera	chrUn	14	CH_vvi_61	15	283	0.0000000000386305
Vitis vinifera	chr7	15	CH_vvi_39	3	4	0.000137691
Zea mays	10	13	CH_zma_135	5	10	0.0000000459386
Zea mays	2	13	CH_zma_18	10	25	1.67206e-18
Zea mays	2	14	CH_zma_12	10	25	1.67206e-18
Zea mays	10	15	CH_zma_14	3	5	0.000319621

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V