PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_461	3	3	0.000200981
Arabidopsis thaliana	2	13	CH_ath_289	4	6	0.00000527878
Arabidopsis thaliana	2	13	CH_ath_460	3	3	0.000200981
Arabidopsis thaliana	3	13	CH_ath_210	4	4	0.000000352913
Arabidopsis thaliana	4	13	CH_ath_552	3	4	0.000802842
Brachypodium distachyon	Bd1	13	CH_bdi_298	3	3	0.0000505589
Carica papaya	supercontig_69	13	CH_cpa_370	4	23	0.00035726
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_382	4	7	0.000000362106
Oryza sativa ssp. japonica	7	13	CH_osa_350	4	7	0.000000435269
Populus trichocarpa	Chr07	13	CH_ptr_363	5	13	0.000000448293
Populus trichocarpa	Chr19	13	CH_ptr_223	5	6	0.00000000210831
Setaria italica	scaffold_9	13	CH_sit_576	3	4	0.000160743
Solanum lycopersicum	ch02	13	CH_sly_550	3	3	0.0000854043
Solanum lycopersicum	ch12	13	CH_sly_549	3	3	0.0000854043
Solanum lycopersicum	ch12	13	CH_sly_155	6	12	0.000000000157647
Vitis vinifera	chr8	13	CH_vvi_237	4	4	0.0000000668354
Vitis vinifera	chr9	13	CH_vvi_282	4	5	0.000000333853

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V