PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR006566
Description: FBD domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_8	21	50	6.43748e-31
Arabidopsis thaliana	5	13	CH_ath_223	5	6	0.000000726237
Arabidopsis thaliana	5	13	CH_ath_264	7	27	0.00000251531
Arabidopsis thaliana	5	13	CH_ath_24	17	61	1.01592e-20
Arabidopsis thaliana	3	14	CH_ath_8	21	50	6.43748e-31
Arabidopsis thaliana	5	14	CH_ath_17	17	61	1.01592e-20
Brachypodium distachyon	Bd2	13	CH_bdi_213	6	38	0.00000286912
Brachypodium distachyon	Bd2	13	CH_bdi_348	3	3	0.000186723
Brachypodium distachyon	Bd2	13	CH_bdi_64	9	53	0.0000000000218105
Brachypodium distachyon	Bd2	14	CH_bdi_22	10	169	0.000000026782
Carica papaya	supercontig_34	13	CH_cpa_38	5	6	0.00000000002473
Carica papaya	supercontig_97	13	CH_cpa_193	3	4	0.0000384346
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_37	10	16	1.69378e-22
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_869	3	5	0.000510248
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_229	6	18	0.00000000072896
Oryza sativa ssp. indica	Chr12	13	CH_osaindica_461	4	8	0.00000334117
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_36	10	16	1.69378e-22
Oryza sativa ssp. japonica	1	13	CH_osa_48	9	13	2.38957e-20
Oryza sativa ssp. japonica	12	13	CH_osa_368	4	6	0.000000806326
Oryza sativa ssp. japonica	4	13	CH_osa_575	3	3	0.0000558813
Oryza sativa ssp. japonica	7	13	CH_osa_367	5	20	0.000000780005
Oryza sativa ssp. japonica	1	14	CH_osa_51	10	29	5.66688e-19
Setaria italica	scaffold_2	13	CH_sit_549	3	3	0.0000992784
Setaria italica	scaffold_4	13	CH_sit_550	3	3	0.0000992784
Setaria italica	scaffold_5	13	CH_sit_143	7	22	0.000000000049105
Setaria italica	scaffold_7	13	CH_sit_114	6	7	0.00000000000161374
Sorghum bicolor	chr_2	13	CH_sbi_91	9	40	0.000000000000309129
Sorghum bicolor	chr_3	13	CH_sbi_144	6	11	0.000000000199252
Sorghum bicolor	chr_2	14	CH_sbi_44	12	137	0.000000000000131845
Vitis vinifera	chr1	13	CH_vvi_347	3	4	0.00000190036
Zea mays	7	13	CH_zma_123	4	11	0.00000002642

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V