PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_284	3	3	0.00000433635
Brachypodium distachyon	Bd2	13	CH_bdi_31	6	6	0.0000000000000123382
Brachypodium distachyon	Bd4	13	CH_bdi_95	5	8	0.000000000874847
Musa acuminata	chr5	13	CH_mac_73	4	5	0.0000000133537
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_125	5	5	0.000000000000108353
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_899	3	14	0.000577116
Oryza sativa ssp. japonica	1	13	CH_osa_227	4	6	0.00000000371948
Setaria italica	scaffold_2	13	CH_sit_137	5	6	0.0000000000298872
Setaria italica	scaffold_5	13	CH_sit_76	6	6	0.00000000000000295041
Sorghum bicolor	chr_3	13	CH_sbi_64	6	6	8.12356e-16
Zea mays	8	13	CH_zma_102	4	4	0.00000000482762

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V