PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004320
Description: Protein of unknown function DUF241, plant

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_313	3	4	0.0000118999
Arabidopsis thaliana	4	13	CH_ath_84	5	7	0.00000000000863053
Brachypodium distachyon	Bd1	13	CH_bdi_289	3	3	0.0000379783
Brachypodium distachyon	Bd3	13	CH_bdi_2	14	14	6.78223e-39
Brachypodium distachyon	Bd4	13	CH_bdi_288	3	3	0.0000379783
Brachypodium distachyon	Bd4	13	CH_bdi_287	3	3	0.0000379783
Brachypodium distachyon	Bd3	14	CH_bdi_2	14	14	6.78223e-39
Carica papaya	supercontig_20	13	CH_cpa_1	14	15	1.2676e-40
Carica papaya	supercontig_20	14	CH_cpa_1	14	15	1.2676e-40
Carica papaya	supercontig_20	15	CH_cpa_26	3	15	0.000128415
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_278	4	4	0.00000000826871
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_1	24	26	1.92569e-74
Oryza sativa ssp. indica	Chr08	14	CH_osaindica_2	24	26	1.92569e-74
Oryza sativa ssp. japonica	6	13	CH_osa_237	4	4	0.00000000632088
Oryza sativa ssp. japonica	8	13	CH_osa_1	21	24	1.02704e-63
Oryza sativa ssp. japonica	8	14	CH_osa_2	21	24	1.02704e-63
Populus trichocarpa	Chr02	13	CH_ptr_219	5	11	0.00000000171608
Populus trichocarpa	Chr04	13	CH_ptr_168	5	6	0.0000000000223404
Populus trichocarpa	Chr05	13	CH_ptr_66	8	13	6.82725e-19
Populus trichocarpa	Chr05	13	CH_ptr_379	4	9	0.000000817511
Populus trichocarpa	Chr09	13	CH_ptr_248	4	4	0.00000000650387
Setaria italica	scaffold_1	13	CH_sit_556	3	4	0.000114031
Setaria italica	scaffold_6	13	CH_sit_87	6	6	0.000000000000017235
Setaria italica	scaffold_6	13	CH_sit_13	15	73	6.85804e-28
Setaria italica	scaffold_6	14	CH_sit_16	15	73	6.85804e-28
Solanum lycopersicum	ch02	13	CH_sly_9	11	15	2.80931e-32
Solanum lycopersicum	ch02	14	CH_sly_9	11	15	2.80931e-32
Sorghum bicolor	chr_10	13	CH_sbi_254	4	5	0.000000194706
Sorghum bicolor	chr_7	13	CH_sbi_20	11	15	2.00963e-26
Sorghum bicolor	chr_7	13	CH_sbi_5	14	19	6.56947e-35
Sorghum bicolor	chr_7	14	CH_sbi_20	11	15	2.00963e-26
Sorghum bicolor	chr_7	14	CH_sbi_6	14	19	6.56947e-35
Vitis vinifera	chr3	13	CH_vvi_81	6	6	4.33775e-16
Vitis vinifera	chrUn	13	CH_vvi_662	4	54	0.000720192
Zea mays	1	13	CH_zma_260	3	5	0.0000138037

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V